Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02195 ATGAACTTTGAGAAGTTGTCATCGGGTTATTACAATCATGAGTTGTTCATACCTGGTCAGTTTTATCCAATGGGATATGACACTTCAAATGATAGGTATTTGGAAGGTTTGAGATCAAAAGGTAAGTTATGTTGCACAGCCAATGATAAGAGTAAGGGTTGGAACTTTAGCCTTAAGGAGATAGAGGATGCTACCAATGGATTTGCTAAAGAAAATGAGCTTGGAAGGGGAGATAATGGGATTGTTTATCTTGGTTTGTTACCAAGTAATAGACAAGTGGTAGTGAAGAGGCTAGAACTTTTTGCATCCCAAATGGAAGCAATTGGACTTGCAAAGCACAATAACCTGGTCAAATTACTTGGATATTGTGCAGAGGGTGCTTACAGGATGTCAGTTTCTGAATATGCAGAACATGAAAGTCTGCACCACTGGCTTCATGAATTTCCTGCACAAATCAGCCCTCTAACATGGGATATAAGAAAGAACATAATCCATTGTGTGGCAAAAGGACTGGCATACCTTCATGATGAAGTTAAACCAAAGATTCTCCATGGAAGCCTAAAAGCTACTAATATTTTGCTGGACCACAAATGGAATCCAAAAATATCTGATTTTGGCCTTGTTGAGGTTCTCAGTTCCAAAAGGAGTCACATTATACTAGAAGTGAAAGAATTGAGTAGTAACTTAACTGAGGGTAATGATATTTATGATTTTGGATTACTTATTATGGAGATTGTATCAGGAAAAATCCCTTCATATCACGGCCAGACACAGGTACAACTACCCATATTGGATTCATCAGTTGCTGGTTTTCATTTCTGCACACTTGTCTTTCAGACTAATATAGTGGACTGGTTCAAATCAATGATTTCCAATGGGAAGATGGAGAATGCAATAGATTCAAAATTGCTTAAAATGCCTTCTTCCAAGGCACTTAAACAGGTTGCTTTGGTTGCTCTAAGATGTGTAGATCCTGATGTGAATCCTAGACTCAAGATGAGAGATGTGGTTTGCATGCTTGAAACCAACATTCTTCTTTTTGAGGAACGTCAAATTGCCATGAAGACTTTAGAAGCCAATCACTCTCCACAAAATCAGAAAAAATAG 1107 0.3794 MNFEKLSSGYYNHELFIPGQFYPMGYDTSNDRYLEGLRSKGKLCCTANDKSKGWNFSLKEIEDATNGFAKENELGRGDNGIVYLGLLPSNRQVVVKRLELFASQMEAIGLAKHNNLVKLLGYCAEGAYRMSVSEYAEHESLHHWLHEFPAQISPLTWDIRKNIIHCVAKGLAYLHDEVKPKILHGSLKATNILLDHKWNPKISDFGLVEVLSSKRSHIILEVKELSSNLTEGNDIYDFGLLIMEIVSGKIPSYHGQTQVQLPILDSSVAGFHFCTLVFQTNIVDWFKSMISNGKMENAIDSKLLKMPSSKALKQVALVALRCVDPDVNPRLKMRDVVCMLETNILLFEERQIAMKTLEANHSPQNQKK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02195 368 ProSitePatterns Protein kinases ATP-binding region signature. 74 96 IPR017441 GO:0005524
Vimu8g02195 368 PANTHER OS01G0323000 PROTEIN 52 356 - -
Vimu8g02195 368 Gene3D Transferase(Phosphotransferase) domain 1 137 355 - -
Vimu8g02195 368 Gene3D Phosphorylase Kinase; domain 1 34 135 - -
Vimu8g02195 368 FunFam Os07g0541700 protein 137 223 - -
Vimu8g02195 368 SUPERFAMILY Protein kinase-like (PK-like) 52 341 IPR011009 -
Vimu8g02195 368 ProSiteProfiles Protein kinase domain profile. 68 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g02195 368 Pfam Protein kinase domain 69 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02195 Vimu-Chr8 28415507 28418603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02195 56 341 Receptor kinase-like Gene Family AT1G71830 32.248 4.88e-45 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu8g02195 Pkinase 1.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02195 - - vra:106762086 662.529