Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02193 ATGGCGGTAGGACTCTCCGCCGCCATAACCTTGAAGCCCTTCCTCCGCTACAACCACACCCACTTTCCCAAACCAATTCCAGCCACACTTCCTTTCTCTCCCTTGAGAATTTCCCACCACACAACCTTCTTGAAGACCCAAAAGTTGTCACCTTTTACTCTCTCTGTCCTAACGCAGGACCCCAAAAAAAGCACCCACATGGAAATTGAGGACCAGGAGCAGCCATCACCTTCTCCTCCACAAGTGTTGTCACCAAAGTTGGCGGAGAAATTGGCCAGAAAAGAGTCCGAGAGGTTCACCTACCTCGTCGCTGCTGTGATGTCCAGCTTCGGGGTCACATCCATGGCAGTGCTTGCTGTTTATTACAGATTCGCGTGGCAAATGGAGGGTCTTGGAATTACTGTCTTTGGGATGGCCTACATGTTTGTACACGATGGCTTGGTTCATAAGAGATTCCCTGTGGGCCCCATTGCCAACGTGCCCTATTTCAGAAGAGTGGCTTCTGCTCACCAAGTAATTATCATCATCATTAGGATAACATTATGCACAAAAAATCATTCCTTTTTATTATCATAA 576 0.4774 MAVGLSAAITLKPFLRYNHTHFPKPIPATLPFSPLRISHHTTFLKTQKLSPFTLSVLTQDPKKSTHMEIEDQEQPSPSPPQVLSPKLAEKLARKESERFTYLVAAVMSSFGVTSMAVLAVYYRFAWQMEGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRRVASAHQVIIIIIRITLCTKNHSFLLS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02193 191 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 1 130 IPR045019 GO:0016491
Vimu8g02193 191 MobiDBLite consensus disorder prediction 63 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02193 Vimu-Chr8 28406480 28410391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02193 1 172 Chloroplast and Mitochondria Gene Families AT5G52570 46.465 7.18e-52 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02193 K15746 - gmx:100785541 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02193 8 28406480 28410391 Vimu3g03000 3 43998339 44000203 ECH
Vimu8g02193 8 28406480 28410391 Vimu8g02193 8 28406480 28410391 ECH
Vimu8g02193 8 28406480 28410391 Vimu3g03000 3 43998339 44000203 PCT