Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02184 ATGACCATTGATCATGAGCCAAATACTGAGAGGGGCTTCATCGAGAACAAAGGAGGCCTTGTCTCAAACATGCCAGATGCTGAGCTTTTGATACTTGCTAGTGATGGTCTTTGGAAGGTAATGGCAAACCAAGAAGCAATTGATATTGCTAGAAGGATAAAACATCCACAAAAGGCAGCAAAAAAGCTAATTGTAGAGGCATTGGACAGAGACATTGAAGACAAAAAGCCGAGAGCTTTGGCACTCAGCTGCACTAAGGTGGCGCTCAAGTTTGTGCAAAGGTTGGCGCTTAATGGTAGGGGTGTGTCGCTTAATGCCATTTTGTTCTTTATCGTTTGCTTGCTATGA 348 0.4368 MTIDHEPNTERGFIENKGGLVSNMPDAELLILASDGLWKVMANQEAIDIARRIKHPQKAAKKLIVEALDRDIEDKKPRALALSCTKVALKFVQRLALNGRGVSLNAILFFIVCLL 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02184 115 PANTHER PROTEIN PHOSPHATASE 25 74 IPR015655 GO:0004722|GO:0006470
Vimu8g02184 115 Gene3D - 23 77 IPR036457 -
Vimu8g02184 115 SUPERFAMILY PP2C-like 2 74 IPR036457 -
Vimu8g02184 115 Pfam Protein phosphatase 2C 26 75 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02184 Vimu-Chr8 28308062 28311481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02184 1 74 PP2C-type Phosphatase Gene Family AT1G22280 41.071 3.82e-22 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02184 K17506 - gmx:102667117 112.849