Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02181 ATGGTTTACAAAGGAGTGCTCAAAGACAATGTGAAGGCTGCTGTCAAGAGAGGCATGCCTGGATCAAGACAAGGACTTCCTGAATTCCAGACTGAAATAACAATCTTATCCAAAATTCGCCATCGCCATCTTGTTTCACTGGTTGGATACTGTGAAGAAAATTCCGAGATGATACTAGTCTATGAGTATGTTGAAAAGGGTCCACTCAAAAAGCATCTATATGGTTCAGCAGTACATGTACCTTTGTCTTGGAAGCAGCGGCTTGAGATATGCATTGGTGCAGCTAGAGGTCTCCACTATCTACACACAGGTTTCGCGCAAGGAATCATACACCGTGACATCAAGTCAACCAATATTTTGCTGGATGAGAACTATGTTGCCAAGGTTGCTGATTTTGGTCTTTCAAGATCAGGACCTTGTCTCAACGAAACCCATGTTAGTACTGGTGTGAAAGGAAGTTTTGGTTATCTTGATCCAGAGTATTCATTTGGGGTTGTGCTTTTTGAGGTTCTTTGTGCCAGACCTGCTGTTGATCCACAACTTGATAGGGAACAAGTGAACTTAGCCGAATGGGCACTTGAATGGCAGAAAAAAGGCATGCTGGAACATATTATTGATCCTCATCTTGTTGGGAAGATAAAGCAAAGCTCGTTGAAGAAATTTGGTGAAACAGCAGAGAAATGTTTGGCTGAATATGGTGTTGACAGGCCAACTATGGGTACTGTATTGTGGAATTTGGAATATGCACTTCAGCTCCATGAAAGTGACCAAGAAGATGAGCCATACGATGATAGCAGTGCTCAGGAAACAGTGAATGTGACTACTACGATAACTCCTGGGAGTCCTTCTAGCAACATGAGAAGAGAGGAAAATAATGATAATGGTTATTCAGACATAAATGCTACTGAAGTTTTTTCTCAACTAATGAAGAGTGAAGGTAGATAG 945 0.4159 MVYKGVLKDNVKAAVKRGMPGSRQGLPEFQTEITILSKIRHRHLVSLVGYCEENSEMILVYEYVEKGPLKKHLYGSAVHVPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPCLNETHVSTGVKGSFGYLDPEYSFGVVLFEVLCARPAVDPQLDREQVNLAEWALEWQKKGMLEHIIDPHLVGKIKQSSLKKFGETAEKCLAEYGVDRPTMGTVLWNLEYALQLHESDQEDEPYDDSSAQETVNVTTTITPGSPSSNMRREENNDNGYSDINATEVFSQLMKSEGR 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02181 314 FunFam receptor-like protein kinase FERONIA 1 63 - -
Vimu8g02181 314 Gene3D Transferase(Phosphotransferase) domain 1 65 275 - -
Vimu8g02181 314 Gene3D Phosphorylase Kinase; domain 1 1 64 - -
Vimu8g02181 314 FunFam Receptor-like protein kinase FERONIA 64 268 - -
Vimu8g02181 314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 109 121 IPR008271 GO:0004672|GO:0006468
Vimu8g02181 314 SUPERFAMILY Protein kinase-like (PK-like) 2 250 IPR011009 -
Vimu8g02181 314 ProSiteProfiles Protein kinase domain profile. 1 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g02181 314 SMART serkin_6 2 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g02181 314 MobiDBLite consensus disorder prediction 255 300 - -
Vimu8g02181 314 PANTHER OS07G0166700 PROTEIN 2 253 IPR045272 GO:0004714|GO:0006468
Vimu8g02181 314 MobiDBLite consensus disorder prediction 266 300 - -
Vimu8g02181 314 Pfam Protein tyrosine and serine/threonine kinase 2 204 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02181 Vimu-Chr8 28289769 28290752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02181 2 314 Receptor kinase-like Gene Family AT3G46290 62.162 1.17e-140 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu8g02181 PK_Tyr_Ser-Thr 7.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02181 - - gmx:100814974 589.726