Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02179 ATGTATCACTTAATGCAGGATGCGAATATTGATGATAAGAGTGAAAGTAGACTATATATCGGTAACCTTGATCTTAGAATTACAGAAGCTTCTTTGCTCAAAATGTTTTCGCCTTATGGAAAGATAATTTCTGAGGACTTCTTATGGCACACACGTGGCCCAAAACGTGGGGAGCCACGAGGCTTTGCTTTCATCCAATATAGCACAAAAGAGGAAGCAGAATTAGCCAAGGAGAAAATGCATGGGAGGTTCGCGTGCGGCCGGCCACTGGTTGTTCGTCTTGCCGGTGAGAAGTGCTTGCTGGAAACAGCTGATAAGTCTATAAAAGCAGCAAGTGAAGGGCACAAGATGCTTCTCATTGGTGGTGGGAGTGCCATGGGACAGACAACTCGTACTGCAAAAATAGCTGCTATAAAAAATAAGTTGAAATCCTTAGACGAAGAGAGTTCTAGGACCAAGAAGCAGAAGCAAAGTGACAATATTTATTGA 489 0.4294 MYHLMQDANIDDKSESRLYIGNLDLRITEASLLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRFACGRPLVVRLAGEKCLLETADKSIKAASEGHKMLLIGGGSAMGQTTRTAKIAAIKNKLKSLDEESSRTKKQKQSDNIY 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02179 162 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 97 IPR000504 GO:0003723
Vimu8g02179 162 Coils Coil 135 155 - -
Vimu8g02179 162 Gene3D - 13 105 IPR012677 -
Vimu8g02179 162 SMART rrm1_1 17 93 IPR000504 GO:0003723
Vimu8g02179 162 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 11 99 - -
Vimu8g02179 162 CDD RRM_RBM18 17 95 IPR039157 -
Vimu8g02179 162 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 90 IPR000504 GO:0003723
Vimu8g02179 162 SUPERFAMILY RNA-binding domain, RBD 9 99 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02179 16 98 Eukaryotic Initiation Factors Gene Family AT1G71770 39.759 2.74e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02179 K24527 - gmx:100806572 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02179 8 28279432 28280101 Vimu8g02179 8 28279432 28280101 ECH