Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02174 ATGTCATCGCCGGGGTTCACTGGGGGAGGTGGGGCGTCCGAGTATTTCGCCGGAGCGGGTGGATTCACCGGCAGATCCATTCCGGCAGCCACCATGAACAACCCGAACGGCGTCGCGACTGCCACCGCAAACCTCCACCCTCTCTACCGAACCCAACAACAGAACCTCCCCGCAATGTTTCTAGATCCTGCCTCGCAGATCGCTCAACGCCAAACACCAACCCTTATCGGCAAACGCACCCTCACCGAATTCCAAACCTATAACCAAACCTACAACCAAGCCTATAACCAACCCAACAACAACCCCAACCACGTTCTCTCCAACCTATTGCTTCGTTCCGTTAAGCCTCGAACCAGTTTCTCTCAGGGTTCCATGGATAACTTTCCCGAATTGCATAACCAAAACCCTTCTCTTTACCAACAGCAGCGTTTTGGTGTTCCTTTACTCCATCAGCTCCGTCCCCAGCCCATTAACCTTCCTAGCAATGGGTCTGGGCCCATGCCAAGCCCAAATTTCGGCTATCGGAACTCCGATTTGGGCATGCCACAAAACCGGGTTCGTCTTTCTGGTCCTCTTCCGGTTCCAGTTCAGGTGGCTGAGCCGGAGAAGAAGATCATGGATCACCGGCTTCTGGAATTGGAGAAACAACTTCTGGAGGATAACGATGAAGGAGAAGCCGATGCTGCGTCTGTGATAACCACCAGCGAGTGGTCTGAAACGTATCAGAATTTAATCAGCCCCGGTCCGGTTCAGAAACTGGCTTCGACGTCACCGACTTCATCAACCACTTCGTCTACTTCATCATCTTCCTCCATCGCTTCACCTGCTTCCGGATGCTCAAAGCAGACTCTCATGGAAGCCGCATCTGCAATTGTTGAAGGAAAATATGACATGGCTACTGAGATCCTGAACCGGTTGAACAGTCCGAACCGGATTGACAAATTAACCGATTGCATGGTGTTGGCGTTGAAGTCCAGGATGAATCCGGGGGAATATCCACCTCCAGTGAAGGAGCTCTTCGGCTATGAACATGCTGAGTCCACTCAGTTGATTTTGGAAAACTCCATATGCTTTAAGGTAGGGTTAATGGCTGCGAATCTGGCGATTTTAGAAGCTGCATTTGAGGAGAAAACGGAAAACAAGTTCTGCGTGGTGGATTTTGAGATTGGACAGGGAAAGCAGTATCCGCACCTCCTCAACGCGCTCTCAGCACGTGGACAAAACGTCACGCTCAAAATAGTGGCTGTGGCCGAGAGCGGCAGCGAAGACAGAGTGCATGTCATCGGAGACATGCTGAGTCGTCTAGCAGAAAGGAAGAGGATCGGATTCGAGTTCAGACTTGTATCCACTCAGAAACTCACTGAGTTGACTCGCGCGTCGCTGGGTTGTAACGAGGATGAAGTTCTCATGGTGAACTTTGCTTTCAAGCTTAATAAAATTCCTGATGAGAGCGTCTCCACAGAGAACCCTCGTGACGAGCTTCTCCGGCGCGTGAAGGGACTCGCGCCGCGCGTGGTGACAATAGTGGAGCAGGAGATGAATGCAAACACAGCACCTTTTTTGGCTCGCGTGGCAGAAACGCTGTCGTTTTATGGTGCCTTATTGGAGTCCATGACCTCTAAAGATAACAATAACAGCATCAACAGTTCTGACCGAGTCAGACTCGAAGAAGGACTGACCCGCAAGCTACACAACTCAGTAGCATGCGAAGGCAGAGATCGCGTAGAGCGTTCTGAAGTGTTTGGAAAATGGCGAGCGCGTATGAGCATGGCAGGGTTCGAGTTAAAGTCACTGAGTCAAAACATGGCCGAGTCAATAAAATCACGACTCACCGGCACCACCAACAACAACCGAGTCAACTCGGGACTGACAGTGAAGGAAGAGAACGGTGCTATTTTCTCTGGCTGGATGGGAAGAACACTGACGGTAGCATCTGCTTGGCGTTAA 1947 0.511 MSSPGFTGGGGASEYFAGAGGFTGRSIPAATMNNPNGVATATANLHPLYRTQQQNLPAMFLDPASQIAQRQTPTLIGKRTLTEFQTYNQTYNQAYNQPNNNPNHVLSNLLLRSVKPRTSFSQGSMDNFPELHNQNPSLYQQQRFGVPLLHQLRPQPINLPSNGSGPMPSPNFGYRNSDLGMPQNRVRLSGPLPVPVQVAEPEKKIMDHRLLELEKQLLEDNDEGEADAASVITTSEWSETYQNLISPGPVQKLASTSPTSSTTSSTSSSSSIASPASGCSKQTLMEAASAIVEGKYDMATEILNRLNSPNRIDKLTDCMVLALKSRMNPGEYPPPVKELFGYEHAESTQLILENSICFKVGLMAANLAILEAAFEEKTENKFCVVDFEIGQGKQYPHLLNALSARGQNVTLKIVAVAESGSEDRVHVIGDMLSRLAERKRIGFEFRLVSTQKLTELTRASLGCNEDEVLMVNFAFKLNKIPDESVSTENPRDELLRRVKGLAPRVVTIVEQEMNANTAPFLARVAETLSFYGALLESMTSKDNNNSINSSDRVRLEEGLTRKLHNSVACEGRDRVERSEVFGKWRARMSMAGFELKSLSQNMAESIKSRLTGTTNNNRVNSGLTVKEENGAIFSGWMGRTLTVASAWR 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02174 648 MobiDBLite consensus disorder prediction 248 277 - -
Vimu8g02174 648 ProSiteProfiles GRAS family profile. 271 648 IPR005202 -
Vimu8g02174 648 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 255 620 IPR005202 -
Vimu8g02174 648 Pfam GRAS domain family 281 648 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02174 Vimu-Chr8 28177601 28181157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02174 49 648 GRAS Transcription Factor Family AT5G52510 46.667 1.02e-136 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu8g02174 GRAS 5.1e-81 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02174 - - vun:114181888 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02174 8 28177601 28181157 Vimu8g02174 8 28177601 28181157 ECH
Vimu8g02174 8 28177601 28181157 Vimu3g03007 3 44036287 44039875 PCT