Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02166 ATGGTTACATCATCACTTTGTGCTAATGATTGTGGTTTTTATGGTTCTCCTGCAACAAATAATCTTTGTTCAAAGTGCTATAAAGATTATCTCGCCAAATCAAAGAAGTTATCATCATCATCATCATCATCATGTACTGCTCAAAATCAATGTTCTATCATTGATGACATGATGTCTCTTTCTATCACAAATTCTAAGACAACTGAGAGGAACGATAGAAAGAGATGCAAGAGTTGCAATAAGAAGATTGGGTTATTAGGGTTTCAATGTCGTTGTGGAGATGTTTTTTGTGGAACACACAGATATCCAGAGATGCATTCATGTGAAATAGATTTTAAGAAAATTGGTCGTGAAGTTTTAATTCAACAAAATCCTTTATGCAAGGCTGATAAACTAAAACATAGGATTTGA 411 0.3333 MVTSSLCANDCGFYGSPATNNLCSKCYKDYLAKSKKLSSSSSSSCTAQNQCSIIDDMMSLSITNSKTTERNDRKRCKSCNKKIGLLGFQCRCGDVFCGTHRYPEMHSCEIDFKKIGREVLIQQNPLCKADKLKHRI 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02166 136 SMART AN1_Zf_4 76 113 IPR000058 GO:0008270
Vimu8g02166 136 Pfam A20-like zinc finger 5 28 IPR002653 GO:0003677|GO:0008270
Vimu8g02166 136 ProSiteProfiles Zinc finger A20-type profile. 1 35 IPR002653 GO:0003677|GO:0008270
Vimu8g02166 136 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 44 - -
Vimu8g02166 136 PANTHER AN1-TYPE ZINC FINGER PROTEIN 4 133 - -
Vimu8g02166 136 ProSiteProfiles Zinc finger AN1-type profile. 70 116 IPR000058 GO:0008270
Vimu8g02166 136 FunFam Zinc finger AN1-type containing 6 28 131 - -
Vimu8g02166 136 SUPERFAMILY AN1-like Zinc finger 65 130 IPR035896 -
Vimu8g02166 136 SMART A20_3 4 28 IPR002653 GO:0003677|GO:0008270
Vimu8g02166 136 Gene3D - 2 52 - -
Vimu8g02166 136 Gene3D - 55 131 IPR035896 -
Vimu8g02166 136 Pfam AN1-like Zinc finger 76 111 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02166 Vimu-Chr8 28065763 28066209 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02166 3 133 C2H2 Transcription Factor Family AT3G52800 39.490 2.35e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02166 - - pvu:PHAVU_004G110800g 165.236