Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02165 ATGGAGGAATTCTATTGCGCGTCTGTGGCTTCCACTACTTCAGCTTCCCCTCCAAGGTCGGCTACACCCTCCCCTATACCTTGGTTGGGAACTCTGGCAATCATTGATTATTACATCATAGATCATAAGAGAACATATTGTTTTCGAAGTACAAAAGATGCTGACTTTGGTAGGAGTGGCAGTGCTAAATTACTTGTTGATTCTGGAAAGAGACTGTGGGGAAGGTTCGCAGTAAAGATTAGAGACCCTTTGAAGAAAGTCAGGGTTTGGTTGGGAACCTTTGATTCTGCCGAGGAAGCTGCTCACACCTATGACGTCGTGCACGGACTCTCCGAGGTCCCAAGGCCAAAGCAAATTTCTGATGACGACCGCTGCCGATGA 381 0.4724 MEEFYCASVASTTSASPPRSATPSPIPWLGTLAIIDYYIIDHKRTYCFRSTKDADFGRSGSAKLLVDSGKRLWGRFAVKIRDPLKKVRVWLGTFDSAEEAAHTYDVVHGLSEVPRPKQISDDDRCR 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02165 126 CDD AP2 70 106 IPR001471 GO:0003700|GO:0006355
Vimu8g02165 126 SMART rav1_2 70 117 IPR001471 GO:0003700|GO:0006355
Vimu8g02165 126 SUPERFAMILY DNA-binding domain 71 106 IPR016177 GO:0003677
Vimu8g02165 126 ProSiteProfiles AP2/ERF domain profile. 57 106 IPR001471 GO:0003700|GO:0006355
Vimu8g02165 126 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 70 105 - -
Vimu8g02165 126 Gene3D AP2/ERF domain 66 109 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02165 Vimu-Chr8 28063229 28063740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02165 59 105 AP2-EREBP Transcription Factor Family AT1G50640 67.347 3.29e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02165 K09286 - gmx:100816348 68.1662