LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu8g02146	ATGCCTACATGGTGGGGGAAATCATCGTCAAAAGAAACCAAGAAGAAAGCAAATAAGGAAAGTTTTATCAATACATTTCACCGCAGATTTAAAATCCCATCTGAAAGTAAATCAAGCAGTAGATCTGGCAGTAGATCTGGAGGATCTCGTAGACATTGCAAAGATTCAATTTCTGAGAAAGGGGCTCAGTCGCCTCCTGAATCAAGATCTCCGTCACCTTCCAAAGTGGCAAGGTGTCAAAGTTTTGCTGAAAGGCCTCATGCTCAGCCGCTACCACTTCCTGTCCTGCACCCATCAAATATAAGCCGGGCAGACTCTGAAATTAGCATATCAGCTAAATCAAGACTTGAAAAAGGCTCCAAACCATCATTGTTTCCACTACCAAAACCAGCATGCATGCGTGGTAGGCTGAACCCTGCAGATTTGGATGGAGACTTGGTCACTGCTTCAGTCTCTAGTGAGAGCTCTGCTGACAGTGATGAGCCAGTGGACTCTCGCAATCTTAGTCCTTTGGCAACTGACTGTGAAAACGGGGCTAGAACTGCTGCAGGCTGTCCTTCCAGCTCGATGCCCAAGGATCTATCATCTACTGTTTCCCAAATAAATTCAAGAGAAACCAAAAAACCGGCAAACATTCTGGGTAATCACATGTCTTCTACTTCACCAAAACGGAGGCCTTTAAGCAACCATGTTTCAAATTTGCAGATTCCTCCTCATGGTGCCTTCTGCAGTGCACCTGATAGTTCCAAATCAAGTCCTTCTAGAAGTCCATTGAGAGTATTTGGCACTGAACAGGTGTTGAACTCTGCCTTTTGGGCTGGAAAGCCATATTCGGAGGTCAATTTAGGTGGATCTGGGCACTGCTCAAGTCCAGGTTCTGGTCACAATTCAGGACATAATTCAATGGGAGGGGACATGTCTGGACAGTTATTTTGGCAACCTAGCAGGGGTAGCCCTGAATATTCTCCTGTACCTAGTCCCCGAATGACTAGCCCTGGACCTAGCTCCAGAATTCAGAGTGGTGCAGTTACACCTATTCATCCTAGGGCTGGGGGAACACCCAATGAATCACAGACAGGACGGGTTGATGATGGAAAACAACAGAGTCATCGTTTGCCCCTTCCTCCTTTAGCAGTTACCAATATTTTACCTTTCTCTCATTCAAATTCGGCAGCAACTTCTCCATCCATGCCAAGAAGTCCGGGAAGGGCAGATAATCCAATAAGCCCTGGATCACGTTGGAAAAAAGGAAAACTGCTTGGCAGAGGCACATTTGGACATGTCTTTGTTGGCTTTAATAAGGAAAGTGGTGAAATGTGTGCTATGAAAGAGGTGACTCTGTTTTCAGATGATGCCAAATCTAAAGAAAGTGCTAAGCAATTAATGCAGGAAATTGCCTTATTAAGTCGATTGCGGCATTCAAATATTGTGCAGTACCTTGGTTCTGAAACAGTCGGTGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAGTATGGACAATTTGGTGAACTAGCTATTCGCAGTTTTACTCAACAAATTTTGTCAGGACTTGCTTATTTACATGCTAAAAATACTGTCCACAGGGACATCAAAGGAGCAAATATACTGGTAGATACTAATGGTCGGGTTAAGTTGGCAGACTTTGGCATGGCAAAACATATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCCTATTGGATGGCTCCTGAGGTAGTTATAAAAAACTCCAATGGTTGCAACCTTGCCGTTGATATATGGAGCCTAGGATGCACAGTTTTGGAAATGGCTACAACTAAACCTCCTTGGAGTCAGTATGAAGGGGTTGCTGCAATGTTCAAGATTGGTAATAGCAAGGAACTCCCAGCAATCCCGGATCACCTATCTAGTGAAGGAAAGGATTTTGTTAGGAAATGCCTACAACGGAATCCACACAATCGCCCTTCGGCAACTGAATTATTGGACCACCCTTTTGTAAAATACGCTGCACCTTTAGAGAGACCTATTCTGGGTCCTGATGCTTCTTCAGATCCAGCCGTATCTGGGATCACACAGGGAGCTACAGCTCTGAAAAGGATTCGTATTCTTGTTGAAATGTGTGATTCCCATCAATGCTTCATCCTGTCACTGATTCCCTTGGAAGTCGAGAATAAAAAAGACAGGTATACACATGAAGGTTGGAGGAGAAAACTGCTGATGAAGACTGTTGCCGTCTGGAGAATTGTGGGTATTGGGCAAGGAAGGAGTCCTTCTACATTGGATTCAGATAGACTTTCCCGTCACTCTTCTAGGTTTTTGAAAAGTAATCCTCATGCAAGTGAAATCCATATTCCGAGGAATATATCCTGCCCTGTCTCACCCATTGGAAGCCCACTTTTGAGGCCAAGATCGCCACAACATATGAATGGGAGAATGTCTCCCTCTCCTATATCCAGTCCTCGGACTGCTTCTGGTGCATCCACACCTCTCAACGGTGGTAGTGGTGCCATTCCATTTAGTAATCACTTAGTTTACATTCAAGAGGGTCTTGGAAACTTGCCTAAGTCCTCAAATGGTGTCTACATTAGTGGCCCTACTCATCATGACTTGAATGTGGACATTTTTCGAGGAATGCAACAGACGCCTCACATTTCATCAGAACTGGTTCCAGGTGAAAGTGATGTTCTGGGGAAGCAGTTTGCACGGTCTCCTAGGAACGAGGCATATGATGTTCAATCAGTCTTGGCTGATCGTGTTTGTCGGCAGCTGCTGGGGGATAATGGGAAAGTCAACCCATCCCTTGATCTAAATCCCAATTCTTTGCTCAGCCGGGCTAATGGTTTATGA	2862	0.4462	MPTWWGKSSSKETKKKANKESFINTFHRRFKIPSESKSSSRSGSRSGGSRRHCKDSISEKGAQSPPESRSPSPSKVARCQSFAERPHAQPLPLPVLHPSNISRADSEISISAKSRLEKGSKPSLFPLPKPACMRGRLNPADLDGDLVTASVSSESSADSDEPVDSRNLSPLATDCENGARTAAGCPSSSMPKDLSSTVSQINSRETKKPANILGNHMSSTSPKRRPLSNHVSNLQIPPHGAFCSAPDSSKSSPSRSPLRVFGTEQVLNSAFWAGKPYSEVNLGGSGHCSSPGSGHNSGHNSMGGDMSGQLFWQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPRAGGTPNESQTGRVDDGKQQSHRLPLPPLAVTNILPFSHSNSAATSPSMPRSPGRADNPISPGSRWKKGKLLGRGTFGHVFVGFNKESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHSNIVQYLGSETVGDKLYIYLEYVAGGSIYKLLQEYGQFGELAIRSFTQQILSGLAYLHAKNTVHRDIKGANILVDTNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPAIPDHLSSEGKDFVRKCLQRNPHNRPSATELLDHPFVKYAAPLERPILGPDASSDPAVSGITQGATALKRIRILVEMCDSHQCFILSLIPLEVENKKDRYTHEGWRRKLLMKTVAVWRIVGIGQGRSPSTLDSDRLSRHSSRFLKSNPHASEIHIPRNISCPVSPIGSPLLRPRSPQHMNGRMSPSPISSPRTASGASTPLNGGSGAIPFSNHLVYIQEGLGNLPKSSNGVYISGPTHHDLNVDIFRGMQQTPHISSELVPGESDVLGKQFARSPRNEAYDVQSVLADRVCRQLLGDNGKVNPSLDLNPNSLLSRANGL	953

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu8g02146	953	MobiDBLite	consensus disorder prediction	182	235	-	-
	Vimu8g02146	953	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	62	683	-	-
	Vimu8g02146	953	Pfam	Protein kinase domain	415	671	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu8g02146	953	MobiDBLite	consensus disorder prediction	287	316	-	-
	Vimu8g02146	953	Gene3D	Transferase(Phosphotransferase) domain 1	412	684	-	-
	Vimu8g02146	953	MobiDBLite	consensus disorder prediction	9	35	-	-
	Vimu8g02146	953	CDD	STKc_MEKK1_plant	413	671	-	-
	Vimu8g02146	953	MobiDBLite	consensus disorder prediction	1	257	-	-
	Vimu8g02146	953	MobiDBLite	consensus disorder prediction	386	415	-	-
	Vimu8g02146	953	MobiDBLite	consensus disorder prediction	386	400	-	-
	Vimu8g02146	953	MobiDBLite	consensus disorder prediction	61	77	-	-
	Vimu8g02146	953	ProSitePatterns	Protein kinases ATP-binding region signature.	420	443	IPR017441	GO:0005524
	Vimu8g02146	953	SUPERFAMILY	Protein kinase-like (PK-like)	412	819	IPR011009	-
	Vimu8g02146	953	MobiDBLite	consensus disorder prediction	800	837	-	-
	Vimu8g02146	953	MobiDBLite	consensus disorder prediction	287	372	-	-
	Vimu8g02146	953	FunFam	Mitogen-activated protein kinase kinase kinase	412	694	-	-
	Vimu8g02146	953	SMART	serkin_6	414	671	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu8g02146	953	MobiDBLite	consensus disorder prediction	813	837	-	-
	Vimu8g02146	953	ProSiteProfiles	Protein kinase domain profile.	414	671	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu8g02146	Vimu-Chr8	27810866	27816615	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu8g02146	1	943	MAP Kinase Kinase Kinase	AT1G63700	56.177	0.0	868

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Vimu8g02146		Pkinase	1.9e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu8g02146	K20717		-	cave:132168148	1268.45