LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu8g02131	ATGTCCTTCGGCCCCCGCAGCGACCGGAACTCCGCCGCAAGTTGCTCGAGCTTGGACGGAACGACAAGCTCCGAGGTGGCGATCGCAAAGCAGGAAATCACAGAACTCCAGTTGGTGACCAATGGATCCACTCCTGTGAGAGGAGAAACAGTGGTAAGGTTGAAGGTGGCAATCAATGGTTTTGGACGAATTGGCAGAAACTTTCTTCGTTGCTGGCATGGCCGAAAAGACTCACCCCTTGATGTTGTTGTTGTCAACGACAGTGGTGGTGTCAAGAATGCTTCACACCTGTTGAAATATGATTCTATGCTGGGAACATTTAAAGCAGATGTGAAGATACTAGACAATGAAACGATCACTGTTTATGGTAAGCCCATCAAGGTTGTTTCAAGTAGGAATCCTCTTAAGCTTCCTTGGGCTGAACTAGGAATTGACATTGTTATTGAGCAAGAACACCAGAAACTTGAATCTCATTTTCACATTGTCATCTCTTATATATCACAAACATTAAAGACTCAGATCATTACCAGATCCTACGACCAAGTTGCCATATGCTTCTTCAATACTGTAGACAAGCCAATAGCAAGGCTCATAAAAGAATTTGACCAGTTGGAGGTTAAGATTTTTGGCTTTCCAGTTGTGGTGATGGATATGTATTCTGGTTATGTTCCCATGGGTTATAGTGATTATTTGAAGAAGATGAGCAATCAAGGTACAAGGTGGCTTCACGATACCAAAGTTCTAGGACTAAATATGAAAGTCGTTATGAATGACAGAGAAGGTTTTCTGAAGCAACCAAAAGTGTTTCTATGCTCTAAGAAAGGCGGGAAGGTAAAGAGGCCAGGAAAAGGTGGGAATCGCTTTTGGAAATCAATTGGGCTTGGATTCAAGACTCCCAGAGATGCCATTGAAGTTACAGCTAAGCTTCTTAAAGTGACGCTGTTAATAGCTGATAAAGACTATGAGGGTGCCATTGCTGAGTCAGGGTTTCTTCTCAAGGAAGATGAAAATAATTTAGAGGCATTATTTTTACGTGGCCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACGAGGCATTTTCAAAAAGGTCTTCGCTCAGATCCAGAGCACATGGAAGAATTCAAAGTTGCTCTTGCTGTAGATCCTGACCATCTTGCGCACAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAAGCTTGGCAGAGGAAAAGATGCCTTGAAAAGTTGTAGTGAAGCTCTTGTTCAGAGAGGAGAAGTTAAGCTCTTAATAGAGGATTGGGAGGGAGCTGTGGATGATATGAGATTAGCTGCTCAAAAATTGTTGTATGAAGTGGATGATATGAGATCAGCTGCTCAGCTAAGAGGATTAGGAGGGAGCTGTGGATATGAGATCAGCTGCTCAAAAATTGTTACGCTCAAGTTTGAGCTCGAAGTCGAGAGCTCGAGCTTGACAACTACACCCGAGATCAAATTTTATATGAAGCAATTACTATCTGGGCTTGAGCATTGCCATAGCAGAGGTGTTTTGCACCGTGATATCAAGGGTTCCAATCTGCTCATTGACAACGAAGGAATACTTAAAATTGCAGATTTTGGTTTGGGAACTTTCTATGATCCTACGCAAAAACATCCTATGACCAGTAGAGTTGTGACCCTTTGGTACCGTCCCCCCGAGCTTCTTCTGGGGGCTACATCCTATGGCATTGGTGTCGACCTTTAG	1734	0.4302	MSFGPRSDRNSAASCSSLDGTTSSEVAIAKQEITELQLVTNGSTPVRGETVVRLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKILDNETITVYGKPIKVVSSRNPLKLPWAELGIDIVIEQEHQKLESHFHIVISYISQTLKTQIITRSYDQVAICFFNTVDKPIARLIKEFDQLEVKIFGFPVVVMDMYSGYVPMGYSDYLKKMSNQGTRWLHDTKVLGLNMKVVMNDREGFLKQPKVFLCSKKGGKVKRPGKGGNRFWKSIGLGFKTPRDAIEVTAKLLKVTLLIADKDYEGAIAESGFLLKEDENNLEALFLRGRAYYYLADHDVATRHFQKGLRSDPEHMEEFKVALAVDPDHLAHNVHLHLGLCKVLVKLGRGKDALKSCSEALVQRGEVKLLIEDWEGAVDDMRLAAQKLLYEVDDMRSAAQLRGLGGSCGYEISCSKIVTLKFELEVESSSLTTTPEIKFYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLGTFYDPTQKHPMTSRVVTLWYRPPELLLGATSYGIGVDL	577

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu8g02131	577	SMART	serkin_6	395	577	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu8g02131	577	Gene3D	Transferase(Phosphotransferase) domain 1	489	577	-	-
	Vimu8g02131	577	SUPERFAMILY	TPR-like	314	442	IPR011990	GO:0005515
	Vimu8g02131	577	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	54	150	IPR036291	-
	Vimu8g02131	577	SMART	gp_dh_n_7	54	168	IPR020828	GO:0051287
	Vimu8g02131	577	Pfam	Protein kinase domain	486	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu8g02131	577	ProSiteProfiles	TPR repeat profile.	339	372	IPR019734	GO:0005515
	Vimu8g02131	577	PANTHER	DNAJ PROTEIN P58IPK HOMOLOG	373	444	IPR044620	-
	Vimu8g02131	577	Gene3D	Tetratricopeptide repeat domain	309	456	IPR011990	GO:0005515
	Vimu8g02131	577	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	55	149	IPR020828	GO:0051287
	Vimu8g02131	577	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	513	525	IPR008271	GO:0004672\|GO:0006468
	Vimu8g02131	577	ProSiteProfiles	Protein kinase domain profile.	314	577	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu8g02131	577	SMART	tpr_5	339	372	IPR019734	GO:0005515
	Vimu8g02131	577	SMART	tpr_5	391	424	IPR019734	GO:0005515
	Vimu8g02131	577	Gene3D	-	52	181	-	-
	Vimu8g02131	577	Pfam	Ribosomal_S17 N-terminal	261	305	IPR032440	-
	Vimu8g02131	577	Pfam	Ku70/Ku80 N-terminal alpha/beta domain	152	196	IPR005161	-
	Vimu8g02131	577	SUPERFAMILY	Protein kinase-like (PK-like)	488	577	IPR011009	-
	Vimu8g02131	577	Gene3D	-	243	308	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu8g02131	Vimu-Chr8	27627798	27638598	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu8g02131	490	577	Core Cell Cycle Gene Families	AT5G64960	67.045	2.34e-31	125

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vimu8g02131		Pkinase	2.5e-27	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu8g02131	K05298		K09523	vum:124831042	212.231