Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02120 ATGAATACAGAAGAGAAAGATACGATTGGCGGAGAATCTTCCCTTCATTTTCCCGCACCCGATGGCAACTCTGATCATTTGCTTCATTTACTCTATGCTTTAGATTCACAAGGTTGGCCTTTGCTCTCTCCTATGGACATTCAGTTGCAGAAGTGTGACAAATGTTCTCGAGAGTTTTGCTCCCCCATTAACTATAGAAGACATATTCGTGTAGATCATAGGAAGAAAAATCCTGATAAGGATTTTACAAAAAATAGGGATCTTTTAGAAGCATATTGGGATAAGCTCTCTGCAGAAGAGGCAAAGGAAGTTGTATCATTGGAAAATGTGGTGCTGGAGGCAAGCTGGATAATGCATAAACTGCAGTATGCAGAGAGGCAAACATCCGACATGGAAGTTCCGGGTTCTTCAATTTTAAAATCATTGAAAACTGTTGTTCTAAACCAAAGATTTTATTCATTTCCTCCGCATTATCTGATGGCTGGTACTGTCCTTTTGGATATTCTTCAATCTAAATCTTCCAACTTTCCTATATCTTCCCAAGTGTTGTTCAATGTTCTTGATGAGGCCAGTGAAAAAACATGTTTATGCGGAACAGCGGAGTCAGTGCATAGATATGTATTTGTTGGAGATGCGGGAAGAAATGGTCTTGAACTGAAAAACATAATTGCTTTCACAAGTTTCTTGCTAGAACAAAAATTGTATGAGCTTTTGTTCACTAAGGTGAAGGCGTGGCTTACTGAGAAGGAAGCCGAAGCACTTAGGTGTCAGAAGCAATTGGTGGAGGAGGAAGAGGCTGCTCAGAAAAGGAAACGCCAGAAAAAGCTTAGACAAAAAGAGCAGAAAGCTAGGGAACAAAGACAGAAAGCTGAGGCAGAAATTAAGGGCTATATTGAGAGTGCTGTAAAGGCTTTATCACTGACTGAAGCATCTTTAGAGACGCAAAATTTTGAAGCTCATAATCCGAATGCATTTTCAGATAACGTAGCTTCACCTGTACCTCCCCAATATGTTGACACCAATAAGGAAATAAATGAGGATACTCGTTCAGAGTATGATACTATCGCTGATCAGCATCTTGAGAGATGGTCTGAAGCTGATGACTTGCATACAGACCAGATTTCTCCTCTTCCAAACCTTGAAGTCAATCAGCAACATGAAGCCAACCATGATAACAAGGCATCAGCTATTGTCAGTGGTAGTGAAGTATGGAGTCCAAAGTCTGAAGCTGATGACTTGCATACAGACCAGATTTCTCCTCTTCCAAACCTTGAAGTCAATCAGAAAGATGAAGCCAACCATGATAACAGGGCATCAGCTATTGTCAGTGGTAGTGAAGTATGGAGTCCAAAATCTGAAGCTGATGACTTGCATACAGACCAGATTTCTCCTCTTCCAAGCCTTGAAGTCAATCAGAAACATGAAGCCAACCATGATAACAAGGCATCAGCTATTGTCAGTGGTAGTGAAGTACGGAGTCCAAAGTCTGAAGAAGAAATTGACAAGGTGGTTTTGAAAACCACACAAGAGAAAAAACCTGACCAACCTAAGAACCAACTTTTGATAGGATCCATATCTGTTAATATTGACAATTTCAAACAATCAGAGGGTAATATGGTGGCTTCTCAAAAGGATTCTATTGTTGAGAATGTGGGTAAGGAGAATAGTTCTTGGGATAAGCCAGTGAATACTGATCCTGTCAGCCAGCATGAAACTGAAGATCAAGTTCCAGTTCAAAGTGACGAGACAGAAGTAAGCATGGGTAGTACAGATGGTAGAGCGGATATTAGACGCTTCCAGGCCTTCATCCAGGAAGCAAAAGCTTTCCTTGCAAGAAGATGGGAAGAAGCTTTGGCATCAGATCATGTGGTATTGCATATTAGCTCTGACTCGGATTCTTCATCGTCCCAAGAAACGGAGGATTCTATAGCTGATACCAAATTGCCTGCAACCTCCGGAGCAAACCCGGATTGA 1974 0.4119 MNTEEKDTIGGESSLHFPAPDGNSDHLLHLLYALDSQGWPLLSPMDIQLQKCDKCSREFCSPINYRRHIRVDHRKKNPDKDFTKNRDLLEAYWDKLSAEEAKEVVSLENVVLEASWIMHKLQYAERQTSDMEVPGSSILKSLKTVVLNQRFYSFPPHYLMAGTVLLDILQSKSSNFPISSQVLFNVLDEASEKTCLCGTAESVHRYVFVGDAGRNGLELKNIIAFTSFLLEQKLYELLFTKVKAWLTEKEAEALRCQKQLVEEEEAAQKRKRQKKLRQKEQKAREQRQKAEAEIKGYIESAVKALSLTEASLETQNFEAHNPNAFSDNVASPVPPQYVDTNKEINEDTRSEYDTIADQHLERWSEADDLHTDQISPLPNLEVNQQHEANHDNKASAIVSGSEVWSPKSEADDLHTDQISPLPNLEVNQKDEANHDNRASAIVSGSEVWSPKSEADDLHTDQISPLPSLEVNQKHEANHDNKASAIVSGSEVRSPKSEEEIDKVVLKTTQEKKPDQPKNQLLIGSISVNIDNFKQSEGNMVASQKDSIVENVGKENSSWDKPVNTDPVSQHETEDQVPVQSDETEVSMGSTDGRADIRRFQAFIQEAKAFLARRWEEALASDHVVLHISSDSDSSSSQETEDSIADTKLPATSGANPD 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02120 657 MobiDBLite consensus disorder prediction 387 498 - -
Vimu8g02120 657 MobiDBLite consensus disorder prediction 551 591 - -
Vimu8g02120 657 ProSitePatterns Zinc finger C2H2 type domain signature. 52 73 IPR013087 -
Vimu8g02120 657 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 78 IPR013087 -
Vimu8g02120 657 MobiDBLite consensus disorder prediction 387 402 - -
Vimu8g02120 657 MobiDBLite consensus disorder prediction 628 657 - -
Vimu8g02120 657 MobiDBLite consensus disorder prediction 551 587 - -
Vimu8g02120 657 Coils Coil 246 300 - -
Vimu8g02120 657 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02120 Vimu-Chr8 27527818 27533423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02120 6 642 C2H2 Transcription Factor Family AT4G25610 32.042 8.76e-88 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu8g02120 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02120 - - vra:106765971 1112.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02120 8 27527818 27533423 Vimu8g02120 8 27527818 27533423 ECH
Vimu8g02120 8 27527818 27533423 Vimu3g03021 3 44144915 44151157 PCT