Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02112 ATGGCCTCTTCTACTGGAATTAATTCTTCTGCTACCCCTATCATTCTGTCTGCAAAACTCAATTGGAAAAATTATTTATCATGGTCTTCAGCTATGGAATTATGGTTTCTTGGTCAAGAACACCATAGTCAACTTGTACAAGATATTTCTATGGTCCCTGATGAAGAAAAATCTCAATGGAAAATACTAGACTTCAAATTATGTGCAAAAGCTCGGGCTGCTATAGAAGAGTTAAAGAACTTCTTTGTAGATTATTCTTTGGAAAGTATCAACAAAAAGCTTGACAAGTATTACATGTTCTTAATTTTGAGAAGTTTACACTCGGATTTTGATCACATATATGATCAAGTTTTAGCTGGTGACCAAATTTCGTCTATGAATGGCTTAGTTACTCAACTTCTTCGAGGACCTATATTAGTATACCAGAATTTAAGTGATGCTATTGAAACATCAGCAATGGTGGCACCACGAGAAGGAGGAGGAGGTAGGAATAACCGAGGAGGATGTGGTGGTGGAAGTGGACATCCTCAATGCTCATATTGTAAGAGAATGGACCATACCCAAGATAAATGTTATTCCTTGCATGGCTTTCCAGACAAAGCTGCTCATGAGTGCATGGACATCTCAAGATCATCAGGCAGCAACATAATCAGGCTTGTGGTGCATGATATTCTGCCCATTCTTGGAAGCTCTTGTGAGAGCTCAGGAGATTAG 714 0.3866 MASSTGINSSATPIILSAKLNWKNYLSWSSAMELWFLGQEHHSQLVQDISMVPDEEKSQWKILDFKLCAKARAAIEELKNFFVDYSLESINKKLDKYYMFLILRSLHSDFDHIYDQVLAGDQISSMNGLVTQLLRGPILVYQNLSDAIETSAMVAPREGGGGRNNRGGCGGGSGHPQCSYCKRMDHTQDKCYSLHGFPDKAAHECMDISRSSGSNIIRLVVHDILPILGSSCESSGD 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02112 237 PANTHER GAG_PRE-INTEGRS DOMAIN-CONTAINING PROTEIN 31 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02112 Vimu-Chr8 27402425 27403994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02112 199 237 NLP Transcription Factor Family AT4G24020 53.846 4.53e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02112 - - var:108319143 237.654