Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02111 ATGTCAGAATCCAAGGAAGAAAATCCTGACTTTCTTCCCAAGTCAAAGCCACAGGAGGAACATGGGTTTGTCATGGATTTTGACTTTGGTTTGGAAAGTCTATGGCCCTTGGATCATATATCTTTGGTCTCCAACCCCATGTCTCCTTTTCTCTTATCCACTATCGAACAACCTTTTTCTCCTGTCTGGGCTTTTTCTGATGTTGAAGATGAGAAGCAAATCAGAATTGCAACTGCAGGTAACACAAAAGCAGTAACTGAAAATCCAGTTGAAAATTATGACAACAAGAAATATGTGTCACCATCTCTTGTAGCTGTGCCACCTTCAGAAAATTCAGATGGCTATTGTCTAATCAAGGAAAGAATGACACAAGCACTTCGCCACTTCAAAGAGTTGACTGAACAGAATGTTCTTGCTCAGGTTTGGGCACCTGTGAGGAATGGAAACCGGTATGCACTCACAACTTCAGGCCAACCATTTGTTCTTGATCCACATAGTAATGGACTTCATCAGTACAGAACGGTGTCTCTGAGGTATATGTTTTCTGTGGATGGAGAGAATGATGAAATACTGGGACTTCCTGGTAGAGTTTTTCAGCAAAAAATTCCAGAATGGACTCCTAATGTTCAGTACTATTCTAGCAAAGAGTATCAGCGCCTAAACCATGCGCAACATTACAATGTTCGTGGAACCTTGGCTCTACCTGTGTTTGAGCCTGCAGGGCAGTCATGTGTAGCTGTATTGGAGTTGATAATGACTTCACCGAAGATTAACTATGCTCCTGAGGTTGACAAAATCTGCAAAGCCCTTGAGGCAGTTAATTTAAGGAGTTCAGAGATTTTGGAGCATCCATACAATCAGATTTGTAATGAAGATCGCCAGCACGCATTAGCCGAGATTTTGGAGATACTGACAATTGTATGTGAGACTCATAGTTTGCCACTAGCACAAACATGGGTTCCATGTAAGCATCGGAGTGTCTTGGCACATGGTGGTGGTCATAAGAAAAGTTGCTCAAGTTTTGATGGTTGTTGCATGGGGCAAGTATGCATGTCTATAACTGAGGTAGCATTCTATGTCATAGATGCTCATACATGGGGTTTCCATGAGGCTTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCTCACAACATGTGTTTCTGTGGGAACATTACTCAATTCTGCAAAACTGAATATCCCTTAGTACATTATGCTCTCATGTTTGGTTTAACCAGCTCTTTTGCAGTATGCTTACAAAGCTCTCATACAGGAAATGATGAATATGTGATAGAGTTTTTTCTTCCTCCAAGGATCACAGAATTTAATGAACAAAAGACTTTGTTGAGGTCAATATTGGCCACAATGAAGCCACATTTTCAGAGTCTTAAGATTGCTGCTGGTGTTGAACTTGAGCAGAACTGTTCCATTGAAATTATAGAAGCAAGAACAGAAAGAGTTCATCTGTGGTTTGAATCAATTCCAATTACTCAATCTTCTATGTCGCCACCTAGACATGCCTCCCCAAATATGGGGGAGAGGCTGCCACTGGAGCCATCTGAGCAGCAAATAACAGACTTTGATGACATAAATGATGGAAGGAATCTTGGTGATAATACAGATGCGCACATTGATCAGAACACTTCCTTGGAACCCAGAACCAAAAAGAAACCCTCAGAGAGAAAACGTGGAAAAGCTGAGAAATCTATTAGTCTTAATGTTTTGCAACATTACTTCACTGGAAGCCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAACGCATCTGTAGGCAACATGGGATATCGCGTTGGCCATCTCGAAAGATCAAAAAGGTTAACCGTTCCCTATCCAAGCTCAAGTGTGTCATTGAATCAGTCCATGGTGCTGAAGGTGCGTTTGGTTTGAACTCTCTAAGTACTGGTTCACTTCCCATTGCTGCTGGTTCCTTTTCTGAGCCCTCCACTTCAAACAAGTTCAACCGCCAAACCTCATTGACCATTAGGCCATCAAAACCTAAGATCAATGAACAAGATTTTGATGCTTCTAGAGCATCAGAAACAAACAGACAAGCTGGATTGGAAGGTCACTTTTTAAATACAAGGACACAAAATCCTGAGAAAGTGATTAATGAAAAAGTTGTGGCCGTTCAGGAGATTGGCACTAAAGGTACAACCAGGTTTAGAACTGGGAGTGGCTCAAGTGAAGAGAGTGCAAATCCTTCTCCTCATGGTTCATGCCAAGGTAGTCCCCCAAATGAAATGTCCCTTCCAAAAGATATAGTTGTAACAGGCATCAGTGAGCAATGTCTTGTTTTAAGGGGATCACTGGGGTCAACACTGCACGCAACTAGTACACCGAACCATGCAACTGCATATCCTATGCCTAATTTTGTGGAAACCACAGAACCTCAAGAACCATTTGGAGGACAACTACTTGAGGGTGTTGGTAGTTCTAAGGACTTGAGGAATCTATGTCCTTCAACCGATGCTGTTTTGGAGGATCAGGTTCCAGAACCTTGCAGGATGAATCCTCAATGTTCTGATTTGGCTCCTGTGCAGCACATGGATACTAATAACATGACACCTTTGGCAGTTAGGAAAGAGGTGAAGAATGTGACCATTAAGGCAACTTACAGAGAAGATATCATAAGGTTTAAGATCTCTTTGAACTGTGGCATTGTGGAATTAAAAGAAGAAATTGCCAAAAGATTAAAACTAGAGGAGGGAACATTTGATATCAAGTATCTGGATGACGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGACATCTCAAGATCATCAGGCAGCAACATAATCAGGCTTGTGGTGCATGATATTCTGCCCATTCTTGGAAGCTCTTGTGAGAGCTCAGGAGATTGGAAAGGATGTATATAG 2952 0.4204 MSESKEENPDFLPKSKPQEEHGFVMDFDFGLESLWPLDHISLVSNPMSPFLLSTIEQPFSPVWAFSDVEDEKQIRIATAGNTKAVTENPVENYDNKKYVSPSLVAVPPSENSDGYCLIKERMTQALRHFKELTEQNVLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTVSLRYMFSVDGENDEILGLPGRVFQQKIPEWTPNVQYYSSKEYQRLNHAQHYNVRGTLALPVFEPAGQSCVAVLELIMTSPKINYAPEVDKICKALEAVNLRSSEILEHPYNQICNEDRQHALAEILEILTIVCETHSLPLAQTWVPCKHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITEVAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNITQFCKTEYPLVHYALMFGLTSSFAVCLQSSHTGNDEYVIEFFLPPRITEFNEQKTLLRSILATMKPHFQSLKIAAGVELEQNCSIEIIEARTERVHLWFESIPITQSSMSPPRHASPNMGERLPLEPSEQQITDFDDINDGRNLGDNTDAHIDQNTSLEPRTKKKPSERKRGKAEKSISLNVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAEGAFGLNSLSTGSLPIAAGSFSEPSTSNKFNRQTSLTIRPSKPKINEQDFDASRASETNRQAGLEGHFLNTRTQNPEKVINEKVVAVQEIGTKGTTRFRTGSGSSEESANPSPHGSCQGSPPNEMSLPKDIVVTGISEQCLVLRGSLGSTLHATSTPNHATAYPMPNFVETTEPQEPFGGQLLEGVGSSKDLRNLCPSTDAVLEDQVPEPCRMNPQCSDLAPVQHMDTNNMTPLAVRKEVKNVTIKATYREDIIRFKISLNCGIVELKEEIAKRLKLEEGTFDIKYLDDDHEWVLIACDADLQECMDISRSSGSNIIRLVVHDILPILGSSCESSGDWKGCI 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02111 983 Pfam PB1 domain 884 964 IPR000270 GO:0005515
Vimu8g02111 983 CDD PB1_NLP 884 964 IPR034891 -
Vimu8g02111 983 MobiDBLite consensus disorder prediction 683 705 - -
Vimu8g02111 983 SUPERFAMILY CAD & PB1 domains 883 968 - -
Vimu8g02111 983 MobiDBLite consensus disorder prediction 555 574 - -
Vimu8g02111 983 MobiDBLite consensus disorder prediction 534 574 - -
Vimu8g02111 983 ProSiteProfiles PB1 domain profile. 883 965 IPR000270 GO:0005515
Vimu8g02111 983 SMART PB1_new 883 965 IPR000270 GO:0005515
Vimu8g02111 983 Pfam RWP-RK domain 577 624 IPR003035 -
Vimu8g02111 983 PANTHER PROTEIN NLP8 56 977 IPR045012 GO:0003700
Vimu8g02111 983 MobiDBLite consensus disorder prediction 732 768 - -
Vimu8g02111 983 Gene3D - 880 964 - -
Vimu8g02111 983 MobiDBLite consensus disorder prediction 734 764 - -
Vimu8g02111 983 FunFam RWP-RK domain-containing protein 880 964 - -
Vimu8g02111 983 ProSiteProfiles RWP-RK domain profile. 561 644 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02111 Vimu-Chr8 27394910 27399365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02111 252 978 NLP Transcription Factor Family AT4G24020 51.153 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vimu8g02111 PB1 6.4e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02111 - - gmx:100780901 1720.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02111 8 27394910 27399365 Vimu3g03030 3 44187663 44188885 PCT