LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu8g02108	ATGGAGATCTTGGCTTTATCTGGAACACTTGCTTTCTTTTCCTTATTACCCCTTCTTTTCCTCTTCAAACTCACCTTTTCTTGGTGGATTTCTCCCATCTATACTCATCTTAAGCTCAAAAGATGTGGATTTCGAGGGCCACCTCCAACTTTTCCTCTTGGCAACATTCAAGAGATGAAAAAGAAGAACACTGTTACTTCTTCACTACTACCTTCTAACCTCACCCATGATATACACTCCACTGTCTTCCCCTACTTTTCTCGCTGGCAAAACTCCCACGGGAAGGTGTTTATCTATTGGTTGGGTACAGAACCGTTTTTGTACATTGCTGATCCTGAGTTTCTGAAAAAAATGTCCACCGAGGTTTTAGCCAAGAAATGGGGAAAACCTAGAGTTTTCAGACATGACAGAGACCCTTTGTTTGGAAACGGTTTGGTTATGGTCGAAGGAAATGAATGGGTTCGTCACCGACATGTTATAGCACCGGCATTTTCTCCTCTTAACCTCAAGGTTTATCTCTTTCTCTCTCTCTCTGTAGCTTCTATATATAATACTGACCTTCTAGAGAACATGTTTCATCCTGCAATGGCAAGCATGATGAGTGAGTCTACAAATGAAATGATAGAAAGATGGATTGCACGAATAAACTCGGGTAACTCAGAAATCGATGTGGAAAAAGAGGTTGTGGAAACTGCCGGAGAAATCATTGCAAAAACAAGCTTTGGCATGAAGGGAAGAAATGCAAAGGAAGTGTCTGAAAAACTACGTGCCCTACAAATGTCACTTTTCAGGACAACAAGATACGTAGGAGTCCCATTTGAGAAGTGTTTCAACGTCAAGAAAACCCTAGAGGCCAAGAAACTTGGGAAAGAAATTGATCAACTTTTGCTATCCGTCATAACAACTCGCATGAAATCGATCAAAAGACAAACTCAAGAAGACTTGCTAGGGTTGTTGTTGCAAGGAAATCATCAAGGTGATGGAAAGTTAGGGAAGACATTCACTACTAGAGATTTGTTGGATGAGTGCAAAACTTTCTTCTTTGCTGGCCATGAAACAACTGCATTAGCTATCACATGGACCTTGTTGCTTCTTGCTATGCATGAAGATTGGCAAAACCAGTTAAGAGATGAGATCAGAGAAGTGGTCGGAGATAAAGAACTTGATATCAACGTGCTTGCTGGCTTGAAAAAGATGAAATGGGTGATGAATGAAGTTCTAAGACTCTACCCAACAGCACCAAATGTGCAAAGGCAAGCAAGAGAAGACATTCAAGTTGATAATTTAAGGATCCCTAATGGCACCAACATGTGGATCGATGTTGTCGCAATGCACCATGATCAAGCGTTGTGGGGAAAAGATGTGAATGAGTTTAGACCAGAGAGGTTCATGAACGATGTCAATGGTGGATGCAACCACAAAATGGGATATTTACCATTTGGGTTTGGAGGGAGAACCTGTGTTGGAAGAAACTTGAGCTTCATGGAGTATAAGATAGTGCTAACCCTACTTCTCTCTAGATTTACCTTCAAAGTTTCACCAGGTTATAACCATTCACCCTCTATCATGCTCTCCCTTAGGCCAACCTATGGTCTTCATCTCTTAGTTCAACCCCTTAATTAA	1623	0.4116	MEILALSGTLAFFSLLPLLFLFKLTFSWWISPIYTHLKLKRCGFRGPPPTFPLGNIQEMKKKNTVTSSLLPSNLTHDIHSTVFPYFSRWQNSHGKVFIYWLGTEPFLYIADPEFLKKMSTEVLAKKWGKPRVFRHDRDPLFGNGLVMVEGNEWVRHRHVIAPAFSPLNLKVYLFLSLSVASIYNTDLLENMFHPAMASMMSESTNEMIERWIARINSGNSEIDVEKEVVETAGEIIAKTSFGMKGRNAKEVSEKLRALQMSLFRTTRYVGVPFEKCFNVKKTLEAKKLGKEIDQLLLSVITTRMKSIKRQTQEDLLGLLLQGNHQGDGKLGKTFTTRDLLDECKTFFFAGHETTALAITWTLLLLAMHEDWQNQLRDEIREVVGDKELDINVLAGLKKMKWVMNEVLRLYPTAPNVQRQAREDIQVDNLRIPNGTNMWIDVVAMHHDQALWGKDVNEFRPERFMNDVNGGCNHKMGYLPFGFGGRTCVGRNLSFMEYKIVLTLLLSRFTFKVSPGYNHSPSIMLSLRPTYGLHLLVQPLN	540

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu8g02108	540	SUPERFAMILY	Cytochrome P450	75	538	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Vimu8g02108	540	Gene3D	Cytochrome P450	31	539	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Vimu8g02108	540	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	480	489	IPR017972	GO:0005506\|GO:0016705
Vimu8g02108	540	PRINTS	E-class P450 group I signature	441	465	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Vimu8g02108	540	PRINTS	E-class P450 group I signature	400	418	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Vimu8g02108	540	PRINTS	E-class P450 group I signature	90	109	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Vimu8g02108	540	PRINTS	E-class P450 group I signature	338	355	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Vimu8g02108	540	PRINTS	E-class P450 group I signature	358	384	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Vimu8g02108	540	PRINTS	E-class P450 group I signature	477	487	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Vimu8g02108	540	PRINTS	E-class P450 group I signature	487	510	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu8g02108	Vimu-Chr8	27310695	27313648	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu8g02108	11	539	Cytochrome P450	AT5G52400	57.009	0.0	634

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu8g02108	-		-	gmx:100810679	923.309

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Vimu8g02108	8	27310695	27313648	Vimu8g02108	8	27310695	27313648	ECH
Vimu8g02108	8	27310695	27313648	Vimu3g03038	3	44252896	44255230	PCT
Vimu3g03039	3	44264792	44266761	Vimu8g02108	8	27310695	27313648	PCT

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