Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02108 ATGGAGATCTTGGCTTTATCTGGAACACTTGCTTTCTTTTCCTTATTACCCCTTCTTTTCCTCTTCAAACTCACCTTTTCTTGGTGGATTTCTCCCATCTATACTCATCTTAAGCTCAAAAGATGTGGATTTCGAGGGCCACCTCCAACTTTTCCTCTTGGCAACATTCAAGAGATGAAAAAGAAGAACACTGTTACTTCTTCACTACTACCTTCTAACCTCACCCATGATATACACTCCACTGTCTTCCCCTACTTTTCTCGCTGGCAAAACTCCCACGGGAAGGTGTTTATCTATTGGTTGGGTACAGAACCGTTTTTGTACATTGCTGATCCTGAGTTTCTGAAAAAAATGTCCACCGAGGTTTTAGCCAAGAAATGGGGAAAACCTAGAGTTTTCAGACATGACAGAGACCCTTTGTTTGGAAACGGTTTGGTTATGGTCGAAGGAAATGAATGGGTTCGTCACCGACATGTTATAGCACCGGCATTTTCTCCTCTTAACCTCAAGGTTTATCTCTTTCTCTCTCTCTCTGTAGCTTCTATATATAATACTGACCTTCTAGAGAACATGTTTCATCCTGCAATGGCAAGCATGATGAGTGAGTCTACAAATGAAATGATAGAAAGATGGATTGCACGAATAAACTCGGGTAACTCAGAAATCGATGTGGAAAAAGAGGTTGTGGAAACTGCCGGAGAAATCATTGCAAAAACAAGCTTTGGCATGAAGGGAAGAAATGCAAAGGAAGTGTCTGAAAAACTACGTGCCCTACAAATGTCACTTTTCAGGACAACAAGATACGTAGGAGTCCCATTTGAGAAGTGTTTCAACGTCAAGAAAACCCTAGAGGCCAAGAAACTTGGGAAAGAAATTGATCAACTTTTGCTATCCGTCATAACAACTCGCATGAAATCGATCAAAAGACAAACTCAAGAAGACTTGCTAGGGTTGTTGTTGCAAGGAAATCATCAAGGTGATGGAAAGTTAGGGAAGACATTCACTACTAGAGATTTGTTGGATGAGTGCAAAACTTTCTTCTTTGCTGGCCATGAAACAACTGCATTAGCTATCACATGGACCTTGTTGCTTCTTGCTATGCATGAAGATTGGCAAAACCAGTTAAGAGATGAGATCAGAGAAGTGGTCGGAGATAAAGAACTTGATATCAACGTGCTTGCTGGCTTGAAAAAGATGAAATGGGTGATGAATGAAGTTCTAAGACTCTACCCAACAGCACCAAATGTGCAAAGGCAAGCAAGAGAAGACATTCAAGTTGATAATTTAAGGATCCCTAATGGCACCAACATGTGGATCGATGTTGTCGCAATGCACCATGATCAAGCGTTGTGGGGAAAAGATGTGAATGAGTTTAGACCAGAGAGGTTCATGAACGATGTCAATGGTGGATGCAACCACAAAATGGGATATTTACCATTTGGGTTTGGAGGGAGAACCTGTGTTGGAAGAAACTTGAGCTTCATGGAGTATAAGATAGTGCTAACCCTACTTCTCTCTAGATTTACCTTCAAAGTTTCACCAGGTTATAACCATTCACCCTCTATCATGCTCTCCCTTAGGCCAACCTATGGTCTTCATCTCTTAGTTCAACCCCTTAATTAA 1623 0.4116 MEILALSGTLAFFSLLPLLFLFKLTFSWWISPIYTHLKLKRCGFRGPPPTFPLGNIQEMKKKNTVTSSLLPSNLTHDIHSTVFPYFSRWQNSHGKVFIYWLGTEPFLYIADPEFLKKMSTEVLAKKWGKPRVFRHDRDPLFGNGLVMVEGNEWVRHRHVIAPAFSPLNLKVYLFLSLSVASIYNTDLLENMFHPAMASMMSESTNEMIERWIARINSGNSEIDVEKEVVETAGEIIAKTSFGMKGRNAKEVSEKLRALQMSLFRTTRYVGVPFEKCFNVKKTLEAKKLGKEIDQLLLSVITTRMKSIKRQTQEDLLGLLLQGNHQGDGKLGKTFTTRDLLDECKTFFFAGHETTALAITWTLLLLAMHEDWQNQLRDEIREVVGDKELDINVLAGLKKMKWVMNEVLRLYPTAPNVQRQAREDIQVDNLRIPNGTNMWIDVVAMHHDQALWGKDVNEFRPERFMNDVNGGCNHKMGYLPFGFGGRTCVGRNLSFMEYKIVLTLLLSRFTFKVSPGYNHSPSIMLSLRPTYGLHLLVQPLN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02108 540 SUPERFAMILY Cytochrome P450 75 538 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02108 540 Gene3D Cytochrome P450 31 539 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02108 540 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 480 489 IPR017972 GO:0005506|GO:0016705
Vimu8g02108 540 PRINTS E-class P450 group I signature 441 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02108 540 PRINTS E-class P450 group I signature 400 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02108 540 PRINTS E-class P450 group I signature 90 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02108 540 PRINTS E-class P450 group I signature 338 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02108 540 PRINTS E-class P450 group I signature 358 384 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02108 540 PRINTS E-class P450 group I signature 477 487 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02108 540 PRINTS E-class P450 group I signature 487 510 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02108 540 Pfam Cytochrome P450 82 167 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02108 540 Pfam Cytochrome P450 192 523 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02108 540 PANTHER CYTOCHROME P450 FAMILY MEMBER 24 531 - -
Vimu8g02108 540 PRINTS P450 superfamily signature 349 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02108 540 PRINTS P450 superfamily signature 401 412 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02108 540 PRINTS P450 superfamily signature 487 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g02108 540 PRINTS P450 superfamily signature 478 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02108 Vimu-Chr8 27310695 27313648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02108 11 539 Cytochrome P450 AT5G52400 57.009 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02108 - - gmx:100810679 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02108 8 27310695 27313648 Vimu8g02108 8 27310695 27313648 ECH
Vimu8g02108 8 27310695 27313648 Vimu3g03038 3 44252896 44255230 PCT
Vimu3g03039 3 44264792 44266761 Vimu8g02108 8 27310695 27313648 PCT