Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02102 ATGGAAACCACATCCACACTTACCTATTTCCTCCGCCATGTCGCCGCCAAGTTCCCCTCTCGCCGAGCGCTCTCCGTCGCTGCCAAATTTGACCTCACCCACTCTCGCCTCCATCAACTGGTGGAATCCGCCGCCCAACGGCTGCTCACCGCCGGAATCAAACCCGGCGATGTCGTCGCCCTCACCTTCCCCAATACCGTCGAGTTTGTTATCATGTTTCTAGCCGTTATTCGAGTGCGGTCCACAGCCGCGCCGTTAAACTCGGCTTACACAGCCGAAGAGTTCGAGTTTTATTTATCCGACTCCGAGTCCAAGCTTCTCTTAACATCTTCAGAAGGAAACAACGCAGCCCAAGCCGCAGCTTCAAAACTCAAAATAGCTCACGCCACGGCTTCGGTAACCCAAGCCGAGAGTAACGAACCCGAGCTGAGTCTCTCGCTGAGTCAGTCCGACTCGGTTAACTCGGTCGATTCGGTTGAGTCAGTGGTTAACGATCCTGATGACGTGGCGCTTTTCCTTCACACATCCGGCACCACAAGCCGACCCAAGGGAGTGCCGCTCACTCAGCACAACTTGCTCTCTTCGGTACAGAATATTAAATCGGTGTACCGACTCACTGAGTCTGACTCGACGGTGATTGTGCTTCCACTTTTTCACGTGCACGGTTTGATTGGGGGGTTGCTTAGTTCCCTGGCGGCCGGTGCGGCGGTGGCGCTGCCGGCGGCGGGAAGGTTCTCCGCCTCTGCGTTCTGGAAAGACATGGTGAAGTACAACGCCACGTGGTACACTGCGGTCCCCACCATACACCAGATTATACTGGACCGCCACGCGAACAACCCCGAACCGGTTTACCCGCGGCTCCGGTTCATACGAAGCTGCAGCGCGTCTCTGGCACCGGCTATTTTGGGCAAACTAGAAGAGGCTTTCGGTGCGCCGGTGTTGGAAGCTTATGCGATGACGGAAGCGTCGCATCTCATGGCTTCGAACCCTTTGCCACAAGATGGGCCGCACAAAGCCGGGTCGGTTGGAAAGCCCGTGGGACAAGAAATGGTTATTTTGGACCAAACGGGCCGGGTTCAAGAGGCTGAAGTTAGCGGAGAAGTTTGCATTCGTGGCCCCAATGTTACGAAAGGGTATAAAAATAACGTGGATGCCAATACGGCGGCGTTTGAATTTGGTTGGTTCCATACCGGTGATGTTGGCTACTTGGATTCTGATGGTTATTTGCACCTCGTGGGTCGCATCAAGGAACTCATCAACCGTGGAGGCGAAAAGATATCACCGATTGAAGTTGATGCTGTTCTGCTTTCGCATCCGGACATTGCACAAGCAGTAGCTTTCGGAGCGCCTGATGCCAAGTACGGTGAAGAGATATATTGTGCGGTTATCCCAAGAGAAGGATCAAACCTTGACGAGGCAGAGGTGCTAAGATATAGCAAGAACAATCTTGCATCCTTCAAAGTTCCCAAAAAGGTCTTCATTACTGATTCTCTGCCCAAGACTGCCACCGGAAAGATTTTGCGTCGTCTTGTGACAGAACACTTTGTCTCTCAAATTTGA 1560 0.5321 METTSTLTYFLRHVAAKFPSRRALSVAAKFDLTHSRLHQLVESAAQRLLTAGIKPGDVVALTFPNTVEFVIMFLAVIRVRSTAAPLNSAYTAEEFEFYLSDSESKLLLTSSEGNNAAQAAASKLKIAHATASVTQAESNEPELSLSLSQSDSVNSVDSVESVVNDPDDVALFLHTSGTTSRPKGVPLTQHNLLSSVQNIKSVYRLTESDSTVIVLPLFHVHGLIGGLLSSLAAGAAVALPAAGRFSASAFWKDMVKYNATWYTAVPTIHQIILDRHANNPEPVYPRLRFIRSCSASLAPAILGKLEEAFGAPVLEAYAMTEASHLMASNPLPQDGPHKAGSVGKPVGQEMVILDQTGRVQEAEVSGEVCIRGPNVTKGYKNNVDANTAAFEFGWFHTGDVGYLDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGAPDAKYGEEIYCAVIPREGSNLDEAEVLRYSKNNLASFKVPKKVFITDSLPKTATGKILRRLVTEHFVSQI 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02102 519 Pfam AMP-binding enzyme C-terminal domain 430 505 IPR025110 -
Vimu8g02102 519 SUPERFAMILY Acetyl-CoA synthetase-like 5 517 - -
Vimu8g02102 519 Gene3D - 6 414 IPR042099 -
Vimu8g02102 519 ProSitePatterns Putative AMP-binding domain signature. 172 183 IPR020845 -
Vimu8g02102 519 FunFam Peroxisomal-coenzyme A synthetase 6 414 - -
Vimu8g02102 519 FunFam 4-coumarate--CoA ligase 2 417 518 - -
Vimu8g02102 519 Pfam AMP-binding enzyme 12 421 IPR000873 -
Vimu8g02102 519 CDD FACL_fum10p_like 19 513 IPR045310 GO:0016874
Vimu8g02102 519 Gene3D - 415 517 IPR045851 -
Vimu8g02102 519 PANTHER ACYL-COA SYNTHETASE 3 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02102 Vimu-Chr8 27152771 27160715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02102 2 519 Monolignol Biosynthesis Gene Families AT4G05160 28.839 4.99e-58 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02102 K22133 - gmx:100779306 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02102 8 27152771 27160715 Vimu3g03054 3 44388283 44390345 ECH
Vimu8g02102 8 27152771 27160715 Vimu8g02102 8 27152771 27160715 ECH
Vimu8g02102 8 27152771 27160715 Vimu3g03054 3 44388283 44390345 PCT