Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02062 ATGGAAAAACAGCCATTGGAGAAAGCAAAACCAAAATACAGAAAAGGGTTATGGTCACCTGAAGAAGATAATAAGCTCAGAAACCATGTCCTTAAGCATGGTCATGGATGCTGGAGCTCTGTCCCCATTAAGGCAGGCTTGCAAAGAAATGGAAAAAGTTGCCGACTAAGGTGGATTAACTACCTGAGACCTGGATTGAAGAGAGGAGTTTTCAGCAAACATGAAGAAGATACAATCATGGCTCTTCACCACATGTTAGGCAACAAGTGGTCTCAAATAGCACAGCGGTTGCCAGGAAGGACTGATAATGAGATAAAGAATTACTGGCATTCATATCTGAAGAAGAAAGTGATGAAAACTAAGGAAATGGAATCTGATAAACAAATTGAGCATGCTAGTTCAAGTTCAGACACAGTGGAAAATTCACTCTCTCCACAGAAACTTGCAACTCAAGATCCAAGTTATGCATTGTTACAAAACATGGAAAAAACAGCAACACACTCTGATAACTTTTTCTCACAAAGCTATGACTTTTCCAAAGAGGGTTGTCAGAGTTCCTTACCAAAACTCTTATTTTCTGAGTGGCTTTCAGAGGATCAAGTAAATGGTGCAGGCTCAGTGAATTCTGATGATTCTTTGGTATTGGGAAATGTATTTGATCAGAATTCATCTTTCCAAGAAGCTATAATGCATTTGTTGGAAGGGAACTTTGGTGAAGAGTATCATAATAGTCTAATTCACAGTTCAACCACTGAGGTGTACAATTCACAGCTTAAGCCATCAAATCAAGTTGATGGAAGTGATTTCGTTCACTGTATTCCTGGCAATGATTTATGCAGCAATTTCAGCCTAATCAATCGTGCTATGTAA 870 0.3885 MEKQPLEKAKPKYRKGLWSPEEDNKLRNHVLKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGVFSKHEEDTIMALHHMLGNKWSQIAQRLPGRTDNEIKNYWHSYLKKKVMKTKEMESDKQIEHASSSSDTVENSLSPQKLATQDPSYALLQNMEKTATHSDNFFSQSYDFSKEGCQSSLPKLLFSEWLSEDQVNGAGSVNSDDSLVLGNVFDQNSSFQEAIMHLLEGNFGEEYHNSLIHSSTTEVYNSQLKPSNQVDGSDFVHCIPGNDLCSNFSLINRAM 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02062 289 Gene3D - 70 142 - -
Vimu8g02062 289 CDD SANT 18 62 IPR001005 -
Vimu8g02062 289 CDD SANT 71 113 IPR001005 -
Vimu8g02062 289 Gene3D - 15 67 - -
Vimu8g02062 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vimu8g02062 289 FunFam MYB transcription factor 12 68 - -
Vimu8g02062 289 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vimu8g02062 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vimu8g02062 289 PANTHER MYB DOMAIN PROTEIN 55 8 230 - -
Vimu8g02062 289 MobiDBLite consensus disorder prediction 123 146 - -
Vimu8g02062 289 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vimu8g02062 289 SMART sant 67 115 IPR001005 -
Vimu8g02062 289 SMART sant 14 64 IPR001005 -
Vimu8g02062 289 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vimu8g02062 289 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vimu8g02062 289 FunFam MYB transcription factor 70 141 - -
Vimu8g02062 289 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02062 Vimu-Chr8 26684400 26686920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02062 8 196 MYB Transcription Factor Family AT3G48920 53.439 8.74e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu8g02062 Myb_DNA-binding 2.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02062 K09422 - gmx:100803537 534.643