Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02037 ATGGGCGTGAAGAACTTGTGGGACCTGCTGGAATCGTGCAAGAAAAGGGTTCCCCTTCACCATCTACAGAACAAGAGGGTGTGCGTAGACCTCTCGTGCTGGATGGTGCAGCTTCACAGCGTGAGCAAGTCCCACGCTTGCGTAAAGGAGAAAGTGTATCTTAAAGGGCTCTTTCACCGACTCCGAGCACTCATTGCGCTCAATTGCAGCCTCGTCTTCGTCACAGATGGATCAATTCCTGCCATAAAATTATCAACCTATAGGCGTCGTTTAAATGTTGGAAAGGAGGTAGCACAAAACGAAACAAAGCTACAGAAAGTGACTTCGTTACAGAGAAATATGGGGTCTGAGTTTTCTTGCATGATTAGAGAGGCTAAAATGTTGGGGATGGCTCTTGGAATTTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAATGTGCTTTGTTGAATTTTGAATCATTATGTGATGGATGTTTTAGTCTAGATTCAGACATATTCCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGGAGACGGTGGATATGTTGTTTGTTATGAGATGTCAGATATCGAAAGAAAACTTGGACTTGGAAGGGACTCATTGGAGTCGGCTTGTCAGATAGTCAAATCAATTGGGGACAAAGATGTTCTTAAAAAAATTGCTTCTGAAGGACTTGGATGGGTGAAGAAAAGAAGAGGAGGCAAGAATGATTTTGGGCTGGATGATAACATTTTAGAAGTAATTAATGCTTATATGAAGCCAAAATGTCACTCAGCAGATTCAGATATTGTGCTCAAGGCTTTTGCTCAATATACGTTTCAACGTACTAAACTCCAGCAGCTATGTGCTGAATTCTTTCTGTGGCCTTCGAAGAAAACAGATGGGTATATCCTTCCAAGTATAGCTGAAAGAGATTTACGACGATTTGCCAATTTGCGTTTAACTTCATCTAAAGTTGGACTGGACCTTCCTTTACATGAGGACAATTGCCCTGAGAAGAAGGCGAGTTGTCGTCGAAGATTGCCTAACCTCAAGTCGTTGAGAGAAAGGGGGATTAAACTAGCAAGGTTGGATAGGGCCTTGGCAAGCGATGAATGGGCCACACTTATTGCGGGGGCTTCTGGTGTGGTAAAATCAATGGCAATGGCAGATGTTGTGAAGAAGGCTTGGCCTCTTTGGCAACTATTGAATACAATACAGTCTAATGCTATTTCTTTAAGGGAAGGAATTATCGTGACAAAGCCAATTACACATTTCTACTTTTGA 1278 0.4241 MGVKNLWDLLESCKKRVPLHHLQNKRVCVDLSCWMVQLHSVSKSHACVKEKVYLKGLFHRLRALIALNCSLVFVTDGSIPAIKLSTYRRRLNVGKEVAQNETKLQKVTSLQRNMGSEFSCMIREAKMLGMALGISCLNGIEEAEAQCALLNFESLCDGCFSLDSDIFLFGARTVYRDICLGDGGYVVCYEMSDIERKLGLGRDSLESACQIVKSIGDKDVLKKIASEGLGWVKKRRGGKNDFGLDDNILEVINAYMKPKCHSADSDIVLKAFAQYTFQRTKLQQLCAEFFLWPSKKTDGYILPSIAERDLRRFANLRLTSSKVGLDLPLHEDNCPEKKASCRRRLPNLKSLRERGIKLARLDRALASDEWATLIAGASGVVKSMAMADVVKKAWPLWQLLNTIQSNAISLREGIIVTKPITHFYF 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02037 425 FunFam flap endonuclease GEN-like 2 2 199 - -
Vimu8g02037 425 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Vimu8g02037 425 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Vimu8g02037 425 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vimu8g02037 425 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Vimu8g02037 425 CDD PIN_GEN1 2 200 - -
Vimu8g02037 425 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 339 IPR006084 -
Vimu8g02037 425 SUPERFAMILY PIN domain-like 3 210 IPR029060 -
Vimu8g02037 425 Pfam XPG N-terminal domain 1 91 IPR006085 GO:0004518
Vimu8g02037 425 Gene3D - 2 199 - -
Vimu8g02037 425 SMART xpgineu 130 200 IPR006086 GO:0004518
Vimu8g02037 425 Pfam XPG I-region 133 212 IPR006086 GO:0004518
Vimu8g02037 425 SMART xpgn3 1 97 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02037 Vimu-Chr8 26379465 26387450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02037 1 228 Core DNA Replication Machinery Family AT5G26680 24.419 2.74e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02037 K15338 - gmx:100806919 594.734