Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02025 ATGCCAACAAATTCTCATCCCCAAAACACCCATTGCTACAAACAATTCCCCATCTTTTTCCCTTTTCTTTCCCAATATAATCCCCCAAACCACACTTCCCAACTTCCTACCTTCAAACTCATTTTTCTCTTCACAAACTCTAAATCACACACCCAAATGCCTGAATCAAGTAAATTTCACATCTTTCAAAACACCCTCTTCACATTCTTCTCTCTCTCCTTGCTCCATGCTTCCACAGCTCAAGCACAGTCTTCCATGGAGCCTGTGCCCACATACATCACCCACCACAGCTGGGAGCCCTCCGTTGCCATCACCGTTGGAGCCATCATCTTTGCTCTTCTTGTCATGGGCATCCTCTCCATCTACCTCCGCCGCTGTGCCGAGTCACGGATCATCATCACCACGCAGACCACCACCACCACGGTCCCCTGCTCCTGCGCGCAGGGGATCAACAGGGAACTCCTTAATACCTTTCCCACCCTCTTCTACTCCAACATCAAGGACCTCAAAAAGGGTGAAGAAACGCTCGAATGTGCTGTGTGCTTGACCGATTTCTCAGACAAAGATGCCCTCAGACTCCTCCCCAAATGCAACCACGTGTTCCACCCTCACTGCATTGATTCCTGGCTCGCTTCCCACGTGACGTGCCCTGTTTGCCGCGCGAATCTCAGCCAGGATTCTTGCCAGGTTGCCATAACTGTCCCCACCCTTCATGATGAGGAAGTTTCCGGAAGTGAAGAAACTGTGGCAGAACCAAATCAAAACACTAACACAAACCATGCCGTGAGTCAGGTTTGTGTCGGAAGTCCTGCATTGAGTGATGACACTACCAAAACAGTGTGTGTAAGTGAGGAACAATCTTCATCTCCTGATGTTGTTCCTGAGTTAGAGAGAAACTCAAATTCTGTGACTGGTGATGGGGTGGTTGTTGTTGCTGAGAGGAACCTTTCGAGGTCAAATTCCACTGGGCATTCTCTTGTGGGTGTGGAGAGGTACACGTTGAGGTTACCGGAAGACGTGAGGAGGTACATTCTGGTGAATCATGGAAGGAGTGTTCAGCGTTCTGCTAGTGTTAAGGGTACGTGTTGGAGTGATAGCGAAGAGAGTTATGCCGGGAAGAGGGTGGAAAAGAGGTGGATGATTTGCACGCCGCCATTTGTGGCAAGCCATGGCTGA 1176 0.4957 MPTNSHPQNTHCYKQFPIFFPFLSQYNPPNHTSQLPTFKLIFLFTNSKSHTQMPESSKFHIFQNTLFTFFSLSLLHASTAQAQSSMEPVPTYITHHSWEPSVAITVGAIIFALLVMGILSIYLRRCAESRIIITTQTTTTTVPCSCAQGINRELLNTFPTLFYSNIKDLKKGEETLECAVCLTDFSDKDALRLLPKCNHVFHPHCIDSWLASHVTCPVCRANLSQDSCQVAITVPTLHDEEVSGSEETVAEPNQNTNTNHAVSQVCVGSPALSDDTTKTVCVSEEQSSSPDVVPELERNSNSVTGDGVVVVAERNLSRSNSTGHSLVGVERYTLRLPEDVRRYILVNHGRSVQRSASVKGTCWSDSEESYAGKRVEKRWMICTPPFVASHG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02025 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 227 IPR013083 -
Vimu8g02025 391 ProSiteProfiles Zinc finger RING-type profile. 178 220 IPR001841 -
Vimu8g02025 391 CDD RING-H2_EL5-like 177 220 - -
Vimu8g02025 391 PANTHER RING FINGER DOMAIN-CONTAINING 86 228 - -
Vimu8g02025 391 Pfam Ring finger domain 177 220 IPR001841 -
Vimu8g02025 391 FunFam E3 ubiquitin-protein ligase ATL6 139 226 - -
Vimu8g02025 391 SUPERFAMILY RING/U-box 163 226 - -
Vimu8g02025 391 SMART ring_2 178 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02025 Vimu-Chr8 26252756 26255920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02025 55 345 Rapid Response to Elicitors AT3G05200 37.000 2.96e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02025 K10664 - gmx:100782532 463.766