Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02024 ATGAACATCATAGTACTCTTCATTTTCCTCCCATCATTGCTTTCTTCAGTTTCCTGCACCCCACGCGGTCAATCCTCTTCACCGGAAACGCTTAATGAGGCCGCCGTCAAAGCAACGCTTTTCATGTCACTCGTCATCTTCGTTTTCGCCCTTCTCATCACCGCATTCTGCTTCGTCTTCATCCGCTTCATATCCAACCGAAATCACGCCCTTCCACAAGTCACGCGCGGACTCGACCCGCGCGTCCTCTCCACGTGCCCCGTCATGTCCTACTCCGCGCTGAAACTGAATCACCCCAAAGCGGTGCAAAACGCCCCGTTTCAATGCGCGGTCTGTCTGGCGGACTTCGCCGACGACGACACGCTCCGGCTGCTGCCCAAGTGCTGTCACGTGTTCCACACGCGCTGCATCGAGGCGTGGCTGGCTGCGCACGTGACGTGTCCCGTGTGCCGCAGCGACGTGAGCGCGGAAACAGGGGATGCATGTGTGCGGCACGTGCTGGAGGAGGAAGATTCTGTAAGAGATTTTGGTGTTCTTGTTAGGTCGCATTCTACGGGTCACTCTTTAGAGGGTTTTTCCATCAAAGTTCCTGAGGAAGTGAAGAAGAAGGTTCTAGAAGATGAGGAATGTGGAAATTCCACGAAGATGAATCGTTCAGCAAGTTACGACGTCGTTGTGGGGATTGAAGAAGGGGGTGTAGGTAGCACTACTACTGCTGCTACTACGACAAATGATAATAATAATAATAATAACAGTTGGATTTTGTGGACTTCTCAACCTATTGATTCTGGTGGTTCGGGGATTCCGAAGTTTTGGGGTGCTTCAATGGTGAGAGAAGATAAAGAAAAAGGGAAAGTGACAGAGTTTGATGGAAGAACATTTTTTGATTGTGAAGTTTGA 900 0.5044 MNIIVLFIFLPSLLSSVSCTPRGQSSSPETLNEAAVKATLFMSLVIFVFALLITAFCFVFIRFISNRNHALPQVTRGLDPRVLSTCPVMSYSALKLNHPKAVQNAPFQCAVCLADFADDDTLRLLPKCCHVFHTRCIEAWLAAHVTCPVCRSDVSAETGDACVRHVLEEEDSVRDFGVLVRSHSTGHSLEGFSIKVPEEVKKKVLEDEECGNSTKMNRSASYDVVVGIEEGGVGSTTTAATTTNDNNNNNNSWILWTSQPIDSGGSGIPKFWGASMVREDKEKGKVTEFDGRTFFDCEV 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02024 299 FunFam E3 ubiquitin-protein ligase ATL6 66 157 - -
Vimu8g02024 299 Pfam Ring finger domain 108 151 IPR001841 -
Vimu8g02024 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 157 IPR013083 -
Vimu8g02024 299 SUPERFAMILY RING/U-box 108 158 - -
Vimu8g02024 299 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 35 166 - -
Vimu8g02024 299 SMART ring_2 109 150 IPR001841 -
Vimu8g02024 299 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02024 Vimu-Chr8 26217316 26218904 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02024 4 225 Rapid Response to Elicitors AT3G05200 31.541 1.22e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02024 K10664 - gmx:102665105 260.381