Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02002 ATGGCTCCGCCGCCTCCGGTGGAACACAACGCTGACTCCTCCACCACCGCCTCTGTCGCTGCAGACTCTCAGAGATTCATTCCCACGCCGTTTCTCACCAAAACCTTTCAACTCGTTGACGACCAATCCATCGACGATGTTATCTCCTGGAACGACGACGGATCAACGTTCATCGTGTGGAACCCTACCGTCTTCGCCAGAGACTTGCTTCCTAAATATTTTAAACACAACAATTTCTCCAGCTTCGTTCGCCAGCTCAACACTTACGGATTCAGGAAGGTTGTACCTGATCGGTGGGAATTCTCGAACGAGTGTTTCCGTCGAGGCGAGAAGCAGCTTCTGAGCGAAATTCAACGGCGGAAGATCTCGTTGCCGGTGGCTTCGACGTCGCCGTCTACGACGGCTCCGGCAACGGTTTCTGTTCCATCGTCGATGCCGTTGACTGCTATTCCGATCATATCGCCCTCGAACTCCGGCGAGGAGCAGGTGATATCGTCGAACTCGTCACCGTCGCTTGCGCCGGCGGAGCTCATCGACGAGAACGAGAGGCTTAGGAAAGAGAACGTTCAGTTGACAAAAGAGCTCGCGGAGATGAGATCGCTCTGCAATAATATCTATGCTCTCATGTCAAATTACGCGAACGCCAACGGTAACGGTAACGCAAGTTACCAAACGGACGGCGGTGCTGGTGGCGCACAGGGAAGTAGGGAGTCCGGCATGACGGCGGTGAAGCCGCTCGATTTGATGCCGACGAAACGGATCTCCGGTGAGGACGCGGCGGAGTTGAATCCGAAGCTGTTCGGTGTGGCGATTGGAGCGAAGCGCGCGAGGGAGGGAGGAGGGAGCGGTGGAGAAGAAGGAGGTGGAGCAAAGAAAGATACGCTGCTGCGTCTGCACCACCCAGGTCCTGGGGACGTCAAATCTGAGCCGTTGGATTGCCAAAACCACCGCGAGAATCAGGAAGCGCCGTGGTTGAGTCAGTGTCATATAGCACATCAGAGGGTTTGTAATTGA 1014 0.5523 MAPPPPVEHNADSSTTASVAADSQRFIPTPFLTKTFQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKQLLSEIQRRKISLPVASTSPSTTAPATVSVPSSMPLTAIPIISPSNSGEEQVISSNSSPSLAPAELIDENERLRKENVQLTKELAEMRSLCNNIYALMSNYANANGNGNASYQTDGGAGGAQGSRESGMTAVKPLDLMPTKRISGEDAAELNPKLFGVAIGAKRAREGGGSGGEEGGGAKKDTLLRLHHPGPGDVKSEPLDCQNHRENQEAPWLSQCHIAHQRVCN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02002 337 Gene3D - 24 121 IPR036388 -
Vimu8g02002 337 MobiDBLite consensus disorder prediction 290 310 - -
Vimu8g02002 337 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 214 IPR027725 -
Vimu8g02002 337 FunFam Heat stress transcription factor B-4 23 121 - -
Vimu8g02002 337 SUPERFAMILY "Winged helix" DNA-binding domain 28 120 IPR036390 -
Vimu8g02002 337 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu8g02002 337 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu8g02002 337 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu8g02002 337 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu8g02002 337 MobiDBLite consensus disorder prediction 276 310 - -
Vimu8g02002 337 Coils Coil 181 201 - -
Vimu8g02002 337 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu8g02002 337 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02002 Vimu-Chr8 25938841 25939974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02002 21 337 HSF AT5G62020 47.761 1.98e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu8g02002 HSF_DNA-bind 3.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02002 K09419 - gmx:100812267 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02002 8 25938841 25939974 Vimu8g02002 8 25938841 25939974 ECH
Vimu8g02002 8 25938841 25939974 Vimu3g03085 3 44646250 44647245 PCT