Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02001 ATGACATCCGAGGGAATTGGTAATTGGCCTGGAGGATTTTTTAGAGATGATGATTCAACATCTGCAGATGATGAAATTAGAGAGGTTAATGAAGAAGATGAAATTAAAGAGATCTTGAATGAACCTTTGCTTGAAGGCGAATATGCCAATAACTCAACTCTTTACAAAGGAAAATTGTTTAATAGCGACACCGATGCTTACAATTTTTATTGTTTATTTGCAAAGACTTCTGGTTTTTCAGTTAGACGTGGACATAGTTACAAAAGGAACAAGAATAATATTGAAGATATATATAAAAGAAAGTTTATTTGTCACCGAGGAGGTGTTGCTAAACAAAGAAAAACTACTGCTGAAGTAGAAAAACAAAGGAAACGAAAAAGTTCCAGGTGTAATTGTAGTGCAAAATTGATGATATCTAAAAGAACATTTGGCTTCGAGGAAAAATGGATGGTTACATGTTTCGAAAACTCTCATAATCATGCATTATTAGATGAGAAAGAAATTCGATTTCTTCCAGCTTATCGTGATATCCCTATTAACAATCAAGCTCGTATATTATTATTGTCGAAAGTTGGTTGCTCGGTAAGTCTCATTATGAGAGTGCTTGAAGCGGAGAAAGGGATAGAGGCAGGACATCTACCATTTTTTGATAGAGATATTAGAAATTTTATTATATCTCAAAGTAGCATTGATAAAGAGAACGACGCTTCAGATGTTCTCAAATTATGCAAAGATTTGAAAGACAATGATGATGCTTTCCAATATGATTTTACATTGGATGAAAGTAACAAGTTGGAACATATTATTTCGGTATTTGGTGATTCGATACGAGCATATGAAGCTTTTGGGGATGTGGTTGTCTTTGATACTCCGTATCGGATTAATCGTTATGATATGCCTCTTGGACTATGGGTTGGAGTTAATAATCATGGAAGTTCCATTTTTTTTGGTTGTGTTCTATTAAGGGATGAGAAGATACCTTCCTTCACATGGGCTTTAAAGAGTTTTGTACGCTTTGTGAAAGGAAAATGTCCACAAACAATTCTAACTGATCAAGACCATGCACTTAAAGAAGCTGTTTCAACAGAATTGCCAAATACAAAGCATGCCTTTTGCATATGGCATATTGCAACAAAGTTGCCAACTTGGTTTTCTTTCCTTTTGGGTACAAAATATGATGACTTCAAAACTGAGTTCTATAGACTATATAATTTAGAGTGTGAAAGTGATTTTGAACACCAATGGGATTTGATGGTTGGACGCTTTGATTTAAGTAATAACACATACATTGAGGCATTGTATTTTCATCGTCAATTTTGGGCCTTAGCTTATTTGAAAGAATTCTTTTTTGCTGGGATGACGACAACCGGACGTTCAGAATCTATAAATTCATATATTAAAAAATTCTTGGATGTTAACACGAGTTTGGTGGACTTTGTGAATCAAGTTGGAGTTGCTGTGAACATTAGAAATCAAACTGGAGAAGAGGCGAGAATGCGTCAAAAGTATCATAATCCTCTAATGAAAACGAGTTTTCCGATTGAGGAACATGCTGCATCCATACTCACACCATATGCCTTTGAGTTGCTTCAACATGAGATTGAGTTATCTTCAAAATATGCAGCAACTGTGATTGACAATGACTCTTACTTGGTACGACATCATACCAAACTTGATGGAGGTCGTTCTGTAACTTGGATAAAGGAAAAAAATTCAATTCATTGTTCTTGTAAACAATTTGAATTTTCTGGGATACTATGTAGACATGCTATTCGAGTGTTGTTGAAGAATGATTATTTTAGCATTCCAGAAGAATATCTTCCTTCTCGATGGAGAAAAGAAAGCTCATTGATCCCACAATCAAGACACATAATCAACTATAATGATAACTCCTCTGTTGAGTTTCGATCACTCGTGCAATGTTTAGAGGTTGAATCTTTAAAGACCAAAGATCGAGTTGAAGTAGCTACTAAAGAGTTAAAGAAAGTCATTCACTGTTTAAAAGGCATGCCTGAAGTTCAAGAAAATTCAATTGATCTAGAACATGGTGTTTTGAATGTTGATGAGTGTGATGTTGAAAATCCTATCACTTCTAAAACAAAAGGTCGACCAAGAGGATCAAGGGCAAAAGGAGGAGTTGAAGCTGCAAAGAAGCCTCGTCATTGTCATTATCCTAATTGTGGCGGAACCGATCATGACTCACGAAATTGTCTAATCAAAAGGAAGAAAGACTCATTATTAGCTTCTCAATCATCTCCTAAAAAGTAA 2268 0.351 MTSEGIGNWPGGFFRDDDSTSADDEIREVNEEDEIKEILNEPLLEGEYANNSTLYKGKLFNSDTDAYNFYCLFAKTSGFSVRRGHSYKRNKNNIEDIYKRKFICHRGGVAKQRKTTAEVEKQRKRKSSRCNCSAKLMISKRTFGFEEKWMVTCFENSHNHALLDEKEIRFLPAYRDIPINNQARILLLSKVGCSVSLIMRVLEAEKGIEAGHLPFFDRDIRNFIISQSSIDKENDASDVLKLCKDLKDNDDAFQYDFTLDESNKLEHIISVFGDSIRAYEAFGDVVVFDTPYRINRYDMPLGLWVGVNNHGSSIFFGCVLLRDEKIPSFTWALKSFVRFVKGKCPQTILTDQDHALKEAVSTELPNTKHAFCIWHIATKLPTWFSFLLGTKYDDFKTEFYRLYNLECESDFEHQWDLMVGRFDLSNNTYIEALYFHRQFWALAYLKEFFFAGMTTTGRSESINSYIKKFLDVNTSLVDFVNQVGVAVNIRNQTGEEARMRQKYHNPLMKTSFPIEEHAASILTPYAFELLQHEIELSSKYAATVIDNDSYLVRHHTKLDGGRSVTWIKEKNSIHCSCKQFEFSGILCRHAIRVLLKNDYFSIPEEYLPSRWRKESSLIPQSRHIINYNDNSSVEFRSLVQCLEVESLKTKDRVEVATKELKKVIHCLKGMPEVQENSIDLEHGVLNVDECDVENPITSKTKGRPRGSRAKGGVEAAKKPRHCHYPNCGGTDHDSRNCLIKRKKDSLLASQSSPKK 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02001 755 Pfam SWIM zinc finger 569 596 IPR007527 GO:0008270
Vimu8g02001 755 MobiDBLite consensus disorder prediction 707 734 - -
Vimu8g02001 755 Pfam MULE transposase domain 285 378 IPR018289 -
Vimu8g02001 755 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 51 665 IPR031052 GO:0006355
Vimu8g02001 755 SMART 26again6 573 600 IPR006564 GO:0008270
Vimu8g02001 755 MobiDBLite consensus disorder prediction 1 25 - -
Vimu8g02001 755 MobiDBLite consensus disorder prediction 695 734 - -
Vimu8g02001 755 Pfam FAR1 DNA-binding domain 68 163 IPR004330 -
Vimu8g02001 755 ProSiteProfiles Zinc finger SWIM-type profile. 562 598 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02001 Vimu-Chr8 25895716 25898160 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu8g02001 FAR1 3.1e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02001 - - vra:106766304 1119.76