Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu8g01990 | ATGGGTTTTCTCCGGCGACTCTTCGGCGCCAAGAAACACCACAACCCGCCACCCTCCGACGGCTCAGCTCCTAAACCTGCCAAGGACAAGAAAACGTGGAGCTTCGTGAAGCATAGTACGAGGTACAAGTCCACCACGTTGTCCTCACTTAACAACTTTGACCCTTCTACTTCTTCTGCTCCTTTCTCCGATTCCTTGGACGCCAACAAGCATGCCATCGCCGTCGCCGCCGCCACCGCCGCCGTCGCAGAGGCCGCTCTCGCCGCCGCCCATGCAGCTGCGGAGGTCGTGAGGCTGACAAGCGGCAATGGGCCTCCCGCCGGAAGACCCACCACGGCGTCTCATCCACGGCCGGCGGCTGAGAATACCGCCGCCGCCGTGAAGATTCAGTCGGCGTTCCGAGGTTACTTGGTCATGGACCTCCGTGCTGGAGGGTCACTGCCATGTTGCCAAGCAAGGAGGGCTTTGAGAGCACTTAAGGCATTGGTGAAGTTGCAAGCATTGGTGAGAGGCCACATTGTGAGAAAGCAAACTACTGATATGCTAAGGCGCATGCAGACTTTGGTGCGACTGCAGTCTCGGGCACGTGCCACACGTGGGAACTTGTCTGATAATATGCATTCTTTCAAGTCTTCACTTTCTCATTACCCTGTCTCAGAAGATTATCAGCACTCACTTTATGGCTATAGTACGAAATTTGATGGATCTGTTCTCAAGAGATGTAGTTCTAACGCAAATTTTAGGGACGTTGACATGGAGAAAGCCCGGTTTGATTCCCATTGGCTAGACAATTGGATGGAGGAAAATTCTTGGAGCCAAACTAGAGATGGTTCATTGAAAACTGGGCATCTTGATGATGAAAAGAGTGACAAGATTCTTGAAGTGGATACTTGGAAGCCACACTTGAATAGTAGTGGCAGCTCATTTCAGGCAGCACAGCATTATTTGTCTTCTGATTACAACAATGAGAGTTTTGTGGCATATGAGTCTCCATCAAAACGTTCTTCAAAAACTCTATATCCAAGTCTCTCTTCAAGGGAGGTTCTACCCTTTGGCTCTCTGAAGCTTCACAGAGGAAAAGAAGAAGCATCTTTGAGAAATGTTGAGGATAGTCCTCAAGCATTCTCTGCTTCCTCCAGACATGGAAGTGTTTCAAGGAGAAGTCCATTCACACCAACTAAGAGTGAGTGTGCATGGAGTGTCTTCAGTGGCTATTCTGGTCATCCCAATTACATGTCAAATACTGAATCTTCAAGAGCCAAGGTTAGGTCACATAGTGCTCCAAGGCAAAGAATTGAGTTTGAGAGATATGGTTCCACAAGAAGGTCTCTACAGGGTTTTTGGGATGCAGGACCTAGTTCTGATAGGGATTCTGATTTTAGAAGCAAGGGCTATCCTACCACAAACAGCAGCTTGAACAGAATTGGAAGTGCCAATTTAAGGTGA | 1446 | 0.4882 | MGFLRRLFGAKKHHNPPPSDGSAPKPAKDKKTWSFVKHSTRYKSTTLSSLNNFDPSTSSAPFSDSLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGNGPPAGRPTTASHPRPAAENTAAAVKIQSAFRGYLVMDLRAGGSLPCCQARRALRALKALVKLQALVRGHIVRKQTTDMLRRMQTLVRLQSRARATRGNLSDNMHSFKSSLSHYPVSEDYQHSLYGYSTKFDGSVLKRCSSNANFRDVDMEKARFDSHWLDNWMEENSWSQTRDGSLKTGHLDDEKSDKILEVDTWKPHLNSSGSSFQAAQHYLSSDYNNESFVAYESPSKRSSKTLYPSLSSREVLPFGSLKLHRGKEEASLRNVEDSPQAFSASSRHGSVSRRSPFTPTKSECAWSVFSGYSGHPNYMSNTESSRAKVRSHSAPRQRIEFERYGSTRRSLQGFWDAGPSSDRDSDFRSKGYPTTNSSLNRIGSANLR | 481 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu8g01990 | 481 | Pfam | Protein of unknown function (DUF4005) | 371 | 443 | IPR025064 | - | |
| Vimu8g01990 | 481 | PANTHER | IQ-DOMAIN 5-RELATED | 30 | 453 | - | - | |
| Vimu8g01990 | 481 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Vimu8g01990 | 481 | MobiDBLite | consensus disorder prediction | 444 | 481 | - | - | |
| Vimu8g01990 | 481 | SMART | iq_5 | 157 | 179 | IPR000048 | GO:0005515 | |
| Vimu8g01990 | 481 | SMART | iq_5 | 121 | 142 | IPR000048 | GO:0005515 | |
| Vimu8g01990 | 481 | MobiDBLite | consensus disorder prediction | 463 | 481 | - | - | |
| Vimu8g01990 | 481 | Pfam | IQ calmodulin-binding motif | 160 | 177 | IPR000048 | GO:0005515 | |
| Vimu8g01990 | 481 | Pfam | IQ calmodulin-binding motif | 123 | 138 | IPR000048 | GO:0005515 | |
| Vimu8g01990 | 481 | MobiDBLite | consensus disorder prediction | 100 | 120 | - | - | |
| Vimu8g01990 | 481 | MobiDBLite | consensus disorder prediction | 360 | 392 | - | - | |
| Vimu8g01990 | 481 | Gene3D | - | 119 | 187 | - | - | |
| Vimu8g01990 | 481 | ProSiteProfiles | IQ motif profile. | 160 | 187 | IPR000048 | GO:0005515 | |
| Vimu8g01990 | 481 | MobiDBLite | consensus disorder prediction | 369 | 392 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu8g01990 | Vimu-Chr8 | 25771317 | 25775483 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu8g01990 | 1 | 446 | IQD Protein Family | AT5G62070 | 45.336 | 3.38e-58 | 196 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu8g01990 | - | - | vum:124834771 | 846.269 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vimu8g01990 | 8 | 25771317 | 25775483 | Vimu8g01990 | 8 | 25771317 | 25775483 | ECH | |
| Vimu8g01990 | 8 | 25771317 | 25775483 | Vimu3g03092 | 3 | 44708283 | 44712358 | PCT |