Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01986 ATGGAAGGTCGTAGTGAAATGGGTATGATGGGAGAGAGTTTTGATACGAGTAATTTGCTGGGGAGGATTAGGGATGATGACTATGAAAGTCGCTCTGAAAGTGATAATTTTGATGGTGGATCTGCTGATGAGCAAGATTTTGGCGATGATCAACCACAGAGAAAGAAGAAGAAATATCACAGACACACTCCTCAGCAGATTCAGGATCTTGAAGCATTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAACCGATCTCAGCAAGAGGCTTGGCTTGGAGAACAAGCAAGTGAAGTTCTGGTTTCAAAATCGACGAACCCAGATGAAAACACAATTGGAGAGGCACGAGAACATGGTTCTTAAGCAGGAGAATGACAAGCTTCGAGCTGAGAATGGTGTGATGAAGGAAGCTTTGGCTAATCCTATATGTAACAACTGTGGTGGTCCAGCGATTCCTGGTCAAATTTCACTGGAGGAGCACCAGACAAGAATTGAAAATGCTCGATTGAAGGATGAACTGAACCGGATCTGTACATTAGCAAACAAGTTCTTGGGCAGGTCCCTTTCATCAATGGCAAGCCCTATGTCTATGCCACCCACAAATTCTGGCCTTGACCTTGCTATTGGAAGAAATGGAATTGGTGGTTCAAGCAATTTTGGCATGCCCGTGCCAATTGGCTTTGATTTGGGTGATGGAGCTTTAGGCTCTTCACCTGCAATGGCAAGTATGGCTGCTAGAGCACCACTGGGAATGACGGGAAACGAAATCCATCTTGAAAGATCTATGCTTATAGATATTGCCATAAATGCTATGGATGAACTGGTTAAGATGGCTCGACAAGATAACCCTCTTTGGATTAAGAGTTCTGACGGTAGGAATGAAGTTCTAAACTGTGATGAATATGCAAGAATGTTTCCTACTTTAGTTGGAACAAAACCTGCTGGATATCTGATTGAAGCTACAAGAGCAACTGGAGTTGTACTAGCCAGCAGCTTGGGCCTTGTGGAAACTTTCATGGATGTGGATCGGTGGCAAGAGATGTTTTCATCTATGGTGGCTAGTGCTTGCACTTTGGATGTGATATCTGGTGGCACAAATGGAACTAGAAATGGAGCTTTGCAACTGATGCTAGCTGAACTTCAATTGCTTTCCCCACTGGTCCCTACTCGTCAAATGTCTTTGCTCAGGTTTTGCAAGCACCATGCTGAAGGTGTATGGGTTGTGGTCGATGTTTCCATTGATATTCTGCGTAATGCTTCCAATTCACATCCATCAATGAGTTGCAGGAGGCTTCCTTCTGGTTGTGTTATTCAGGATATGCCCAATGGTTTGTCCAAGATTACTTGGGTCGAACATTCCCAGTATGATGAGAGTGTCATCCACCAACTTTGTCGTCCATTGGTTAGTTCTGGTATTGGCTTTGGTGCTCAGAGATGGATTGCATCTCTCCTAAGACAGTGTGAATGCTTGGCAATCCTCATGACTCCTCCTGGTCCATCTGATGACCCTACAGTCCTTAGCCAATCCAATAGGAGAAGCGTGTTGAAGCTGGCTCAGCGCATGAATGAGTATTTCTGCTCAGGGATTTGTGGTTCATCTGCACGCAAGTGGGAAGTTGTTCACATTGGTAATCTTGCTGATGACATGAAAATCATGACTCGGAAAATTGTGGATGATCCAAATGAGGCTCCTGGCTATGTGTTGAGCGCTTCAACTTGTGTCTGGTTGCCAGTGCCTCGACAAAGGGTGTTTGACTTTTTACGTAATGAACAGCTGAGAGGGGAATGGGACATGTTGTCCAAAGGTGGTCCAATGAAGGAGATGCTCCATGTTCCTAAAGGGCAAGATCATGGAAACTGTGTTTCCATTCTTCAATATGGTAATAATGAGGGCAACGTGCTGTATCTGCAAGAATCATGGACCGATGCAACTGGGTCAATGGTGGTGTACTCTCCAATCAACATGCAGTCTTTGAACATGATGATGATGAACACTGGAGATTCATCATTTGTCTCTCTTCGTCCGTCAGGATTTGCTATTCTGCCAGATGGCCATTCAAACAACAGTGACAACAATGATGGTGGTGGTGGTAGCTGTTTGCTGACAGTTGGATTACAAATGTTGCAGAATGACAACCCTTCAGCCAAGTTCACATTGGAGTCAGTTCAAACTGTCAATTCCCTCCTTTCATGCACCATTCAAAAGGTGAAAGAAGCACTGGGAGTTTCCTGA 2238 0.4455 MEGRSEMGMMGESFDTSNLLGRIRDDDYESRSESDNFDGGSADEQDFGDDQPQRKKKKYHRHTPQQIQDLEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMVLKQENDKLRAENGVMKEALANPICNNCGGPAIPGQISLEEHQTRIENARLKDELNRICTLANKFLGRSLSSMASPMSMPPTNSGLDLAIGRNGIGGSSNFGMPVPIGFDLGDGALGSSPAMASMAARAPLGMTGNEIHLERSMLIDIAINAMDELVKMARQDNPLWIKSSDGRNEVLNCDEYARMFPTLVGTKPAGYLIEATRATGVVLASSLGLVETFMDVDRWQEMFSSMVASACTLDVISGGTNGTRNGALQLMLAELQLLSPLVPTRQMSLLRFCKHHAEGVWVVVDVSIDILRNASNSHPSMSCRRLPSGCVIQDMPNGLSKITWVEHSQYDESVIHQLCRPLVSSGIGFGAQRWIASLLRQCECLAILMTPPGPSDDPTVLSQSNRRSVLKLAQRMNEYFCSGICGSSARKWEVVHIGNLADDMKIMTRKIVDDPNEAPGYVLSASTCVWLPVPRQRVFDFLRNEQLRGEWDMLSKGGPMKEMLHVPKGQDHGNCVSILQYGNNEGNVLYLQESWTDATGSMVVYSPINMQSLNMMMMNTGDSSFVSLRPSGFAILPDGHSNNSDNNDGGGGSCLLTVGLQMLQNDNPSAKFTLESVQTVNSLLSCTIQKVKEALGVS 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01986 745 Gene3D - 266 476 IPR023393 -
Vimu8g01986 745 Pfam START domain 268 491 IPR002913 GO:0008289
Vimu8g01986 745 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Vimu8g01986 745 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 51 742 IPR042160 -
Vimu8g01986 745 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Vimu8g01986 745 SUPERFAMILY Bet v1-like 519 738 - -
Vimu8g01986 745 CDD START_ArGLABRA2_like 262 490 - -
Vimu8g01986 745 SUPERFAMILY Bet v1-like 261 491 - -
Vimu8g01986 745 SMART HOX_1 55 117 IPR001356 GO:0003677
Vimu8g01986 745 Coils Coil 107 127 - -
Vimu8g01986 745 CDD homeodomain 56 113 IPR001356 GO:0003677
Vimu8g01986 745 MobiDBLite consensus disorder prediction 1 63 - -
Vimu8g01986 745 MobiDBLite consensus disorder prediction 19 38 - -
Vimu8g01986 745 Gene3D - 42 129 - -
Vimu8g01986 745 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Vimu8g01986 745 ProSiteProfiles START domain profile. 258 494 IPR002913 GO:0008289
Vimu8g01986 745 SMART START_1 267 491 IPR002913 GO:0008289
Vimu8g01986 745 SUPERFAMILY Homeodomain-like 38 113 IPR009057 -
Vimu8g01986 745 FunFam Homeobox-leucine zipper protein HDG1 41 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01986 Vimu-Chr8 25714667 25717850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01986 1 742 Homeobox Transcription Factor Family AT3G61150 52.163 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu8g01986 START 7.4e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01986 K09338 - gmx:100820113 1163.67