Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01979 ATGCCCCCCATGACACCTTCGCGGGTGACGGGAGGGTTAACCCAATCATCATCATCACATTCTGGAGTTTTCTTTCAAAGAGATGGACTGTCACAGAGTGTAGTTAACTCTCACCTAAGCTCATCGTTTGTTAATTCATCCAGCACGGTTTCGGGAGCCGGTCATTCAAACCTGGGTCTGGTTTCTGGGGATATGAATAATGCAGTTCTAAATAGTGTGGCAAACTCAGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACAGATGCAAATTCTGCTCTCTCTGGTGGCCCCCATTTGCAGCGAAGTGCCAGTGTTAACACGGACTCATACTTACGATTACCTGCCTCACCCATGTCATTTACGTCAAATAATATTAGTATTTCGGGCTCATCAGTGATTGATGGTTCCTCTGTAGTACAGCAGAGCTCTCATCAAGATCAGAATGTTCAACAATTGCAGCAGAATCAGCAACAGCTGCAGGGTGCTTCAAGTGCTACATCGTTGCCTGCGTCTCAAACTGGTCCGTCTACCCTTCATATGGGTTCACATGTCCCTGGATCTTTCATTCATGATCCAAATAATGTATCTCAGCTGTCCAAAAAACCTAGACTGGATATCAAACAGGAAGATATAATGCAGCAGCAGCAGGTTATACAACAGATTCTTCAGAGACAAGATTCCATGCAATTGCAGCAGGGTCGTAATCCACAGTTACAGGCTTTACTTCAACAACAGCAGAGACTGAGACAACAACAACTCTTTCAGTCAATGCCACAGTTACAGCGAGTGCAGTTGCAACAACAGCAGCAGCAGCAACAACAACAAATGCAATTGAGGCAGCAGTTACAGCAACAAGTGATGCAGCCCTCTTCTGCTGTTAAGCGTCCATACGATAATAGTGTTAGTGGGGTTTGTGCTCGTCGATTGATGCAGTATCTCTATCATCAAAGGCAAAGGCCAAATGATAATAGTATTGCGTATTGGAGAAAATTTGTGGCTGAATACTACTCCCATCGTGCAAAGAAACGGTGGTGCTTGTCGTTATATAACAATGTTGGGCATCATGCACTTGGTGTTTTCCCGCCAGCAGCAATGGATGCGTGGCAGTGTGATATTTGTGGTTCTAAATCTGGAAGGGGATTTGAGGCCACTTATGAAGTATTACCTAGACTCAATGAAATCAAATTTGGCAGTGGAGTGATTGATGAACTTTTGTTTCTGGACTTGCCACGTGAAATAAGATTTCCTTCTGGAGCAATGATGTTAGAATATGCAAAAGCAGTCCAAGAGAGTGTATATGAACAGCTTCGCGTTGTTCGTGAAGGCCAACTTCGCATCATATTCACTCAAGATTTGAAGATATTATCTTGGGAGTTCTGTGCAAGGCGGCATGAAGAACTTATTCCTCGAAGGTTGGTTGCACCACAGGTCAACCAATTAGTTCAGGTTGCTCAAAAATGCCAGAGTACAATTGCTGAAAGTGGGGCTGATGGGGTTTCCCAGCAAGACTTGCAAACAAACAGCAACATAGGGGTGGTGGTGCAAATGACGTTAGTGATTAGGGTATTGACAGCGGGACGCCAGCTTGCTAAAATTTTGGAGTTGCAATCACTTAATGACTTGGGTTTTTCTAAAAGATATGTGAGATGTTTGCAGATATCGGAGGTTGTCAACAGCATGAAAGACCTAATTGATATTTGTGAAGAGCACAAAATTGGGGCAATTGAGAGTTTAAAAAATTATCCTCGACTAGCAACAGCCTCAAAGCTCCAGATGCAAAAGATGCAGGAAATGGAACAGATGGCAAGTGTTCATGGTCTGCCTACTGATAGAAACACACTCAATAAGCTGATGGCAATGAATCCTGGATTGAACAACCACATAAACAGCACTCATAATATGGTTAATCGTGGTGCTTTGAGTGGGTCAGCCCATTTAGTTCTTACCAACTACCAAAATCTTCTCATGAGGCAAAATTCAATGAATTCTAGCCCTGGCTCCAATCCTGGATCCTCATTCAATAATTCGAACCCAAGTCCCTCTTCTGCTTTGCAAGGAGCTGGTCCTTCTTTAATTCCAGGCTCAATGCAAAACTCTGTAGGTGGTTTCCCAGGTCCCCATCTACCCTCACAGCAGCAGCAGCAGCAGCAACTCCTTCAACAACGTACATTAAGTGGAAATGGTTTACTGCAACAAAGTCATTCACAGGGGTCCCAAGGAAATCAAGCCCTACAGCAGCAGCAGATGATCCAGCAACTGGTGCAGGAAATGTCAAATAACAATGGAGGAATGCAATCACAGTCTCTTGGTGGACACAATGCAAATGGGAATCTGGCAAAAAATGCACTGGGTTTTGGGGGCCATGCTCCATCCTTAAGTGGAGGTTCTGTCAATGTTCCAGGAAACAATGGACCCATTTCAAGGAATAATAGCTTCAAAACAGCTTCAAACAGTGATTCTTCTGCAGCTGGTGGCAACAATGGATTCAACCCAAGAACATCTGATATGCCACAAAGTCTACATTTGCAAGGTATGGTTCAGGATATTGGCCATGAGTTCGCGGATAGCTCCTTCTTTAACAGTGATCTTGATGATAACATGGGTTTTGGATGGAAGGCATGA 2622 0.4394 MPPMTPSRVTGGLTQSSSSHSGVFFQRDGLSQSVVNSHLSSSFVNSSSTVSGAGHSNLGLVSGDMNNAVLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASVNTDSYLRLPASPMSFTSNNISISGSSVIDGSSVVQQSSHQDQNVQQLQQNQQQLQGASSATSLPASQTGPSTLHMGSHVPGSFIHDPNNVSQLSKKPRLDIKQEDIMQQQQVIQQILQRQDSMQLQQGRNPQLQALLQQQQRLRQQQLFQSMPQLQRVQLQQQQQQQQQQMQLRQQLQQQVMQPSSAVKRPYDNSVSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSHRAKKRWCLSLYNNVGHHALGVFPPAAMDAWQCDICGSKSGRGFEATYEVLPRLNEIKFGSGVIDELLFLDLPREIRFPSGAMMLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELIPRRLVAPQVNQLVQVAQKCQSTIAESGADGVSQQDLQTNSNIGVVVQMTLVIRVLTAGRQLAKILELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDICEEHKIGAIESLKNYPRLATASKLQMQKMQEMEQMASVHGLPTDRNTLNKLMAMNPGLNNHINSTHNMVNRGALSGSAHLVLTNYQNLLMRQNSMNSSPGSNPGSSFNNSNPSPSSALQGAGPSLIPGSMQNSVGGFPGPHLPSQQQQQQQLLQQRTLSGNGLLQQSHSQGSQGNQALQQQQMIQQLVQEMSNNNGGMQSQSLGGHNANGNLAKNALGFGGHAPSLSGGSVNVPGNNGPISRNNSFKTASNSDSSAAGGNNGFNPRTSDMPQSLHLQGMVQDIGHEFADSSFFNSDLDDNMGFGWKA 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01979 873 MobiDBLite consensus disorder prediction 795 837 - -
Vimu8g01979 873 MobiDBLite consensus disorder prediction 794 837 - -
Vimu8g01979 873 Pfam LIM-domain binding protein 308 579 IPR029005 -
Vimu8g01979 873 Coils Coil 265 285 - -
Vimu8g01979 873 MobiDBLite consensus disorder prediction 658 719 - -
Vimu8g01979 873 MobiDBLite consensus disorder prediction 136 180 - -
Vimu8g01979 873 MobiDBLite consensus disorder prediction 658 697 - -
Vimu8g01979 873 PANTHER LIM DOMAIN-BINDING PROTEIN 60 856 IPR029005 -
Vimu8g01979 873 MobiDBLite consensus disorder prediction 704 719 - -
Vimu8g01979 873 MobiDBLite consensus disorder prediction 136 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01979 Vimu-Chr8 25642669 25648267 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01979 303 583 C2H2 Transcription Factor Family AT1G43850 58.363 9.18e-104 340