Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01977 ATGCATGTGTTCTTTCCTCTGTTGTTAGATTTAAAACAGCAATTGTCCAGTGTTCAGAAGGAAGAACAATTCTGGATGCATTTGGTTGAACCGGAGTTATTTGGTTTGGTAAAAGGTTTTGGAATACTATCAGGGGTTCACACCCACACAGATTGCAGTCACCAAGGGGGGATGACCTCCATGACACCTTCGCGGGTGACAGGAGGGTTAACCCAATCATCTTCACATTCTGGAATTTTCTTTCAAGGAGATGGGCAGTCGCAGAGTGTAGTTAACACTCGCTTAAGTTCATCTATTGTTAACTCATCTAGCACAGTTACTGGAGCCCGTCGAACAAACCTGGGTCCGGTTTCTGGTGATATGAATAATGTAGGTTTGAACAGTGTGGCAAACTCAGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACTGATGCAAATTCTGGTCTCTCTGGTGGCCCCCATTTGCAGCGAAGTGCCAGTGTTAATACGGACTCATACTTACGATTACCTGCCTCACCCATGTCATTTACGTCAAACAATATTAGTATTTCGGGCTCATCAGTGATCGATGGTTCCTCTGTAGCACAGCAGAGCTCTCATCAAGATCATAATGTTCAACAATTGCAGCAGAGTCAGCAGCAGCTGCAGGGTGCTGCAAGTGCTACATCGTTGCCTGCGTCTCAAACTGGTCCGTCTTCCCTTCATATGGGTGCGCATGCCCCTGGATCTTTCATTCATGATCCAAATAATGTATCTCAGCTGTCCAAAAAACCTAGGTTGGATATCAAGCAGGAAGATATAATGCAGCAGCAGCAGCAGCAGGTCATGCAACAGATTCTTCAAAGACAAGATTCCATGCATTTGCAGGGTCGTAATCCGCAGTTACAGGCTTTATTTCAACAACAGCAGAGACTGAGACAACAACAAATCTTTCAGTCAATGCCCCAATTACAGCGTGTGCACTTGCAGCAACAACAGCAACAACAACTACAACAACAACAAATGCAATATAGGCAGCAACTACAGCAGCAAGTGATGCAGCCCTCTTCTTCTGTCAAGCGCCCATGTGATAATGGTGTCAGTGGGGTTTGTGCTCGTCGACTGATGCAATATCTCTATCATCAAAGGCAACGGCCAAATGATAATAGTATTGCTTATTGGAGAAAATTTGTGGCTGAATATTACTCTCCTCGTGCAAGGAAACGGTGGTGCTTGTCGTTGTATAACAATGTTGGCCATCATGCGCTTGGTGTTTTCCCCCAAGCAGCTACGGGTTGCAATAGTGGTAGATACAGAATTTGTGCATTGCATGTACCTGCAACTTATGAAGTATTACCTAGACTTAATGAAATCAAATTTGGCGGCGGAGTCATTGATGAACTGTTGTTTCTGGACTTGCCACGTGAAATAAGATTTTCTTCTGGTGCCATGATGTTAGAATATGCAAAAGCAGTTCAAGAGAGTGTATATGAGCAGCTTCGAGTTGTTCGTGAAGGTCAACTTCGCATCATATTCAGTCAAGATTTGAAGATATTATCTTGGGAGTTCTGTGCAAGGCGGCATGAAGAACTTCTTCCCCGAAGGTTGGTTGCACCACAGAATATTTGTTATGAAGATCTTCATTTGTTGCTTGGTTTGATTGGTAGTTGGGAGTGTAGGGACTTCCCTAAAGTGGTCAACCAGTTAGTACATGTAACTCAAAAGTGCCAGAGTACAATTGCTGAAAGTGGGGCAGATGGGGTTTCTCAACAAGAGTTGCAAACAAAAAGCAACGTGGTGTTGACAACAGGGCGCCAGCTTGCAAAGATGTTGGAGTTGCAATCGCTTAATGACTTGGGTTTTTCTAAAAGATATGTGAGATGTTTGCAGATTGCGGAGGTTGTCAACAGCATGAAAGACCTAATAGATATCTGTGGCGAGCAAAACGTTGGGGCAATAGAGAGTTTGAAAAGTTATCCTCTACTAACAAATGCCTCAAAGCTCCAGATGCAAAAGATGCAGGAAATGGAGCAGCTGGCAAATGTTCATGGTCTGCCAACTGATAGAAACACGCTCAATAAGCTGATGGCAATGAATCCTGGATTGAACAACCAGATAAACAACGGTCAAAATGTGGTTAATCGTGGTGCTTTGAGTGGGTCAGCCCATTCAGCACTTACCACCAACTACCAAAATCTTCTCATAAGGCAAAATTCAATGAATTCTAGCCCTGGCTCCCTTCAGCGCGAAGGATCCTCATTCAATAATTCTAACCCAAGTCCCTCTTCTGCTTTGCAAGGAGCTGGTCCTTCTTTAGATCCAGGCCCAATGCAAAACTCGCCTGTAGGTGGCTTCGCAGGTTCCCATCAAACCCTGCAGCAGCTGCCGCTGCCGCAACTCCTCCAACAGCGCACATTAAGCGCAAATGGTTTACTGCAACAAAATCATTCACCGGGGTCCCAAGGAAATCAAGCTCTATCGCAGCAGCAGATGATCCACCAACTAGTGAAGGAAGTGTCAAATAACAATGGGGGAATGCAATCACAGCCTCTTGGTGGACCCAATGCAAATGGGAATATGGCAAAGAATGCAATGGGTTTTGGGGGCAATACTCCATCCGTAAGCGGAGGTTCTGCCAATGTTCCACGAAACAATGGACCCATTTCGAGGAATAATAGCTTCAAAACAGCTTCAAACAGTGATTCTTCTGCCGCTGCTGGCAACAGTGGCTTCAACCCAAGAACATCTGATATGCCGCAAAGTCTACATTTGCAAGATGTGGTTCAGGACATTGGCCATGAGTTCGCGGATAACCCCTTCTTTAACAGTGATCTTGATGATGAAATGGAGTGCCTTTTGCATGTACCTCCCCCTTTTCACAGGAAGGCAACCGAGCGGCCCAAACGAAAAGAAGATAATCGGAGAACTCGGTTCAAGCATGGGAAAACGGTAAAGCCACGTCAGAAAAGGTTAGTCGACTCTCGGTCCTACAAATCCCTACCGAAACATTTTGGCACCCACCATGGGGCCGGGGGACATCCCACTAAAACCGCAAGGAACCAAGACTAG 3048 0.4531 MHVFFPLLLDLKQQLSSVQKEEQFWMHLVEPELFGLVKGFGILSGVHTHTDCSHQGGMTSMTPSRVTGGLTQSSSHSGIFFQGDGQSQSVVNTRLSSSIVNSSSTVTGARRTNLGPVSGDMNNVGLNSVANSAPSVGASSLVTDANSGLSGGPHLQRSASVNTDSYLRLPASPMSFTSNNISISGSSVIDGSSVAQQSSHQDHNVQQLQQSQQQLQGAASATSLPASQTGPSSLHMGAHAPGSFIHDPNNVSQLSKKPRLDIKQEDIMQQQQQQVMQQILQRQDSMHLQGRNPQLQALFQQQQRLRQQQIFQSMPQLQRVHLQQQQQQQLQQQQMQYRQQLQQQVMQPSSSVKRPCDNGVSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRARKRWCLSLYNNVGHHALGVFPQAATGCNSGRYRICALHVPATYEVLPRLNEIKFGGGVIDELLFLDLPREIRFSSGAMMLEYAKAVQESVYEQLRVVREGQLRIIFSQDLKILSWEFCARRHEELLPRRLVAPQNICYEDLHLLLGLIGSWECRDFPKVVNQLVHVTQKCQSTIAESGADGVSQQELQTKSNVVLTTGRQLAKMLELQSLNDLGFSKRYVRCLQIAEVVNSMKDLIDICGEQNVGAIESLKSYPLLTNASKLQMQKMQEMEQLANVHGLPTDRNTLNKLMAMNPGLNNQINNGQNVVNRGALSGSAHSALTTNYQNLLIRQNSMNSSPGSLQREGSSFNNSNPSPSSALQGAGPSLDPGPMQNSPVGGFAGSHQTLQQLPLPQLLQQRTLSANGLLQQNHSPGSQGNQALSQQQMIHQLVKEVSNNNGGMQSQPLGGPNANGNMAKNAMGFGGNTPSVSGGSANVPRNNGPISRNNSFKTASNSDSSAAAGNSGFNPRTSDMPQSLHLQDVVQDIGHEFADNPFFNSDLDDEMECLLHVPPPFHRKATERPKRKEDNRRTRFKHGKTVKPRQKRLVDSRSYKSLPKHFGTHHGAGGHPTKTARNQD 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01977 1015 MobiDBLite consensus disorder prediction 952 1015 - -
Vimu8g01977 1015 MobiDBLite consensus disorder prediction 732 760 - -
Vimu8g01977 1015 MobiDBLite consensus disorder prediction 732 782 - -
Vimu8g01977 1015 MobiDBLite consensus disorder prediction 192 234 - -
Vimu8g01977 1015 Pfam LIM-domain binding protein 367 650 IPR029005 -
Vimu8g01977 1015 Coils Coil 323 343 - -
Vimu8g01977 1015 PANTHER LIM DOMAIN-BINDING PROTEIN 116 934 IPR029005 -
Vimu8g01977 1015 MobiDBLite consensus disorder prediction 858 913 - -
Vimu8g01977 1015 MobiDBLite consensus disorder prediction 54 73 - -
Vimu8g01977 1015 MobiDBLite consensus disorder prediction 192 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01977 Vimu-Chr8 25620972 25627532 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01977 362 659 C2H2 Transcription Factor Family AT1G43850 51.325 1.26e-87 299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01977 8 25620972 25627532 Vimu8g01977 8 25620972 25627532 ECH