Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01968 ATGTTCGGATTCTACCATGTTTCCTCTCAGCTCTCCCCTTCTTTCGATTCTTCATCCCCACCGTCCGTTGCATTCTCCGACGAGGAGGTTCTGCTGGCAGTCAGGCATCCCAAGAAGAGGGCGGGCAGGAAGAAGTTCCGGGAGACGCGCCACCCTGTGTACCGCGGAGTCAGGAGGAGGAACTCCGACAAATGGGTGTGTGAGGTGAGGGAGCCAAACAAAAAGAGCAGGATTTGGCTGGGGACTTTCCCCACCCCGGAGATGGCGGCGCGGGCTCACGATGTGGCGGCGATGGCCCTCAGGGGCCGGTATGCCTGCCTCAACTTCGCCGACTCGAGGTGGCGGTTACCAGCCCCTGCTAGTGCCAGCGCCAAGGATATACAAAAGGCAGCAGCTGAAGCTGCTGAAGCTTTCAGACCAGACCAAAGTTCACAAATCAGTAACACTACACAAGAGTGCTTGGAGGAGGAAGATCAGGAAGAGCAAGTGTTGGATATACCTGAGCAGCTGAGGAACATGGTGCTCATGTCCCCATCACATTGCTTAGGGTATGAGTATGAAGATGCTGACTTGGAGGCTCATCAAGATACTGAGGTGTCACTGTGGAGTTTCTCAATCTGA 621 0.5507 MFGFYHVSSQLSPSFDSSSPPSVAFSDEEVLLAVRHPKKRAGRKKFRETRHPVYRGVRRRNSDKWVCEVREPNKKSRIWLGTFPTPEMAARAHDVAAMALRGRYACLNFADSRWRLPAPASASAKDIQKAAAEAAEAFRPDQSSQISNTTQECLEEEDQEEQVLDIPEQLRNMVLMSPSHCLGYEYEDADLEAHQDTEVSLWSFSI 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01968 206 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Vimu8g01968 206 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Vimu8g01968 206 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Vimu8g01968 206 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Vimu8g01968 206 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Vimu8g01968 206 PIRSF PTI6 118 206 IPR017392 GO:0003700
Vimu8g01968 206 PIRSF PTI6 23 160 IPR017392 GO:0003700
Vimu8g01968 206 MobiDBLite consensus disorder prediction 138 159 - -
Vimu8g01968 206 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Vimu8g01968 206 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Vimu8g01968 206 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Vimu8g01968 206 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 204 IPR045277 GO:0003700
Vimu8g01968 206 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01968 Vimu-Chr8 25462345 25463007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01968 4 204 AP2-EREBP Transcription Factor Family AT5G51990 51.556 9.48e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu8g01968 AP2 7.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01968 - - gmx:547622 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01968 8 25462345 25463007 Vimu3g03106 3 44843694 44854033 ECH
Vimu8g01968 8 25462345 25463007 Vimu8g01968 8 25462345 25463007 ECH
Vimu8g01968 8 25462345 25463007 Vimu3g03106 3 44843694 44854033 PCT