Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01963 ATGAGTCCCACAAGCAAAAAACTCCCTGCTTCTTTCACTTCCTTAGTCTCTCTGCACCTCACAACACAACACAACACAACTGTTTCTTCATCTTCCTCAAAGCCAATGGCTTCTGCAACACTCTCTCTGCATTACCCTCTTCTTCTTCATTCTCCTCTTTCTACCAAAATTACCAAACCACCCCTCTCACTGCGACCCCTTCTTCTCCCTCGCCCCCTCCACTCGCGCTTTCTCCTCCCTCCGCCACGCGCCTACGTTACCGCCCCGGCATCCGACCCAAATTTCGGAGACCCGGATCCGAAGTTGATCGGTTTGGTTCCGGAGAAGGCAAAGCCGCAAAACGTGATCACGTGGAGCCTGCTCTGCACGCTTCTCATGAACCACAAACTGCGCCTGGCTCTCGTGTTCGCAACGCTCTTCGCCTGCTCCACCTGTACCCTATCCATGCCCCTCTTTTCCGGACGGTTTTTTGAAGTTCTAATTGGAGCTAGACCTGAACCGTTATGGAAGCTGCTTACTAAAATTGGAGTTCTGTATGCCTTGGAGCCACTTTTAACTATTATTTTTGTTATAAACATGAACATAGTGTGGGAGAAAATTATGTCGACACTAAGAGCTCAGATCTTCGGAAGAATATTGATTCAAAAGATTGAGTTTTTTGACAAATACAAGGTTGGTGAACTCACAGGTTTGTTAACATCTGATTTGGATTCTCTTAAAAATATTGTTAGTGAGAATGTCTCAAGAGATCGCGGATTCAGGGCATTATCTGAGGCAAGCAACTCTACACCAATAAATAATTCCATGCCTTTCAAGAGAGAACCTCTATTTTCTTATGTCACTTACGTCATTGGAACAATATTCATACTTTTTTCTTTATCACCGCAACTGGCACCCATTCTAGGTGTTCTGATGCTCGCAGTTTCCATTTCAATTGCTGTCTACAAGAGATCGACATTGCCGGTCTTTAAAGCACATGGGAAGGCCCAAGCATCTATATCTGACTGTGTGACTGAAACGTTTTCAGCTATTCGAACAGTAAGATCCTTTGGCGGTGAAAAGCGCCAAATGTTCTCTTTTGCAAATCAGGTTCTATCTTTCCAATCAAGTGGGATAAAGCTTGGGACTTTCAAATCTGTAAACGAATCTTTAACTAGAGTTGCAGTTTATATTTCTTTAATAGCATTGTACTGTCTTGGAGGAAGCAAGGTTAAGGCGGGTGAACTCTCTGTTGGAACCATGGCATCTTTTATCGGATATACTTTCACTTTAACATTCGCCGTTCAAGGACTGGTTAATACTTTTGGAGATCTTCGTGGAACTTTTGCTGCTATTGAGAGGATCAACTCTGTTTTTTCTGGAGTTCAAGTTGATGATGCCCTGGCTTATGGCTTAGAAAGAGAACTGAGACAAAAAACAGTGGAGGATGAAAACTATAAATTGGTCTTATCTAATATTTCTACCGAGAATAACCAAAAAAATTATTTTCACTTTATGTCAGCTCTTAAAACATCAAGCAATTTATTTAGCATAGCTTGGTCCGGAGATATTTGCCTTGAAGATGTATATTTCTCTTATCCATTAAGGCCGGATGTGGAAATCTTACGTGGCTTAAATTTAAGACTAAAATGTGGCACTGTAACTGCACTGGTGGGTCCAAGTGGTGCAGGCAAAAGTACAGTAGTCCAGCTATTGTCTCGTTTTTATGAGCCAACAAGTGGCTGTATAACAGTTGCAGGAGAGGATGTCCGAACATTTGACAAGAGTGAATGGGCCCGGGTTGTTTCTATTGTAAATCAAGAGCCTGTTTTGTTTTCGGTGTCTGTTGGAGAAAACATTGCATATGGGCTTCCAGATGAAGATGTCTCTAAAGAAGATGTCATTAAGGCAGCAAAAGCTGCAAATGCTCATGACTTTATAATTTCACTACCACAGGGCTATGATACACTTGTTGGTGAGCGTGGAGGCCTATTGAGTGGAGGACAGAGACAGAGAATTGCTATAGCCCGTGCTCTCCTAAAGAATGCTCCCATCCTTATACTTGATGAGGCTACCAGTGCCCTGGATGCTGTCAGTGAGCGCTTGGTCCAGGAAGCTCTCAACCATTTGATGAAGGGAAGAACCACATTAGTAATAGCCCACCGATTAAGCACAGTTCAAAATGCATACCAAATTGCAGTCTGTTCAGAGGGGAGGATTGCAGAATTAGGCACTCATTTTGAGCTATTGGCTAAGAAGGGCCAATATGCTTCACTGGTTGGCACACAAAGGCTTGCCTTTGAATAA 2286 0.43 MSPTSKKLPASFTSLVSLHLTTQHNTTVSSSSSKPMASATLSLHYPLLLHSPLSTKITKPPLSLRPLLLPRPLHSRFLLPPPRAYVTAPASDPNFGDPDPKLIGLVPEKAKPQNVITWSLLCTLLMNHKLRLALVFATLFACSTCTLSMPLFSGRFFEVLIGARPEPLWKLLTKIGVLYALEPLLTIIFVINMNIVWEKIMSTLRAQIFGRILIQKIEFFDKYKVGELTGLLTSDLDSLKNIVSENVSRDRGFRALSEASNSTPINNSMPFKREPLFSYVTYVIGTIFILFSLSPQLAPILGVLMLAVSISIAVYKRSTLPVFKAHGKAQASISDCVTETFSAIRTVRSFGGEKRQMFSFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGTFAAIERINSVFSGVQVDDALAYGLERELRQKTVEDENYKLVLSNISTENNQKNYFHFMSALKTSSNLFSIAWSGDICLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGPSGAGKSTVVQLLSRFYEPTSGCITVAGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEDVSKEDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQEALNHLMKGRTTLVIAHRLSTVQNAYQIAVCSEGRIAELGTHFELLAKKGQYASLVGTQRLAFE 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01963 761 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 517 755 IPR003439 GO:0005524
Vimu8g01963 761 CDD ABC_6TM_TAP_ABCB8_10_like 136 448 - -
Vimu8g01963 761 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 133 440 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g01963 761 Pfam ABC transporter transmembrane region 133 247 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g01963 761 Pfam ABC transporter transmembrane region 265 427 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu8g01963 761 SMART AAA_5 544 718 IPR003593 GO:0016887
Vimu8g01963 761 SUPERFAMILY ABC transporter transmembrane region 121 247 IPR036640 GO:0005524|GO:0016020
Vimu8g01963 761 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 84 759 IPR039421 -
Vimu8g01963 761 Pfam ABC transporter 535 686 IPR003439 GO:0005524
Vimu8g01963 761 Gene3D ABC transporter type 1, transmembrane domain 116 455 IPR036640 GO:0005524|GO:0016020
Vimu8g01963 761 Gene3D - 514 757 IPR027417 -
Vimu8g01963 761 ProSitePatterns ABC transporters family signature. 658 672 IPR017871 GO:0005524|GO:0016887
Vimu8g01963 761 SUPERFAMILY ABC transporter transmembrane region 265 452 IPR036640 GO:0005524|GO:0016020
Vimu8g01963 761 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 515 759 - -
Vimu8g01963 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 756 IPR027417 -
Vimu8g01963 761 CDD ABC_MTABC3_MDL1_MDL2 517 756 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01963 Vimu-Chr8 25415402 25424112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01963 514 761 Calmodulin-binding Proteins AT2G36910 55.378 2.26e-75 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01963 K05657 - gmx:100791034 1216.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01963 8 25415402 25424112 Vimu8g01963 8 25415402 25424112 ECH