Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01961 ATGGCTGTTGCCAAGAGCGACAGCAACAGTGAACCTTGTACTTCATACAATTGTTACAAAGTAGCAGCCTTGACTGAGACCATATTAGAGACAAGTCAAGTCTCTAATCTAAAAGATCGGTACGTTCTCGGCGAGCAATTGGGTTGGGGACAGTTTGGTGTCATAAGGGCATGTTCTGACAAGTTAACAGGAGAGGTTTTGGCCTGCAAATCAATTGCTAAAGATAGGTTGGTTACTTCGGATGATTTGAGGAGTGTAAAACTTGAGATAGAGATAATGGCTAGGCTATCCGGTCACCCCAATGTTGTGGATCTCAAAGCAGTTTATGAAGAGGAAGGCTTTGTTCACTTGGTGATGGAACTTTGTGCTGGAGGAGAGCTTTTTCATCGATTAGAGAAGCATGGATGGTTTTCAGAATCTGAAGCCAGGGTTATCTTCAGGCACCTTATGCAGGTGGTTTTGTATTGTCATGAAAACGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTAGCCACAAGATCCTCCTCATCTCCTATTAAATTGGCAGATTTTGGACTAGCAACCTACATCAAGCCTGGTCAAAGTTTGCACGGTTTAGTTGGGAGTCCTTTCTACATAGCTCCAGAGGTATTAGCTGGTGCTTATAACCAGGCTGCTGATGTGTGGAGTGCAGGTGTAATTCTTTACATTCTGTTGAGTGGGACGCCTCCGTTTTGGGGGAAGACTAAATCCCGGATTTTTGAAGCTGTTAAAGCTGCTTCCCTCAAGTTTCCATTGGAACCTTGGGATCGCATTTCTGAATCAGCTAAGGATTTGATCAAGGGAATGCTGTGTACAGACCCTTCTCGAAGACTCACTGCCCAAGAGGTTTTAGATCATTGCTGGATGGAAAGCAACCAAACAAATCAAGAACAACTAGGTCAAAATCAAATCCAAAGTTGCAAACAATGGGATGTTGGTGGCAGCTCATTCTCAGCTTCTTTCATGTCCAGGAATCAAGACATTAGCTTTGGCGCTGGTTCTCCTACTTGTGATGCTCAATCGCCTACTTTCACATGCAGATCATCATTTTCTTCTTTTTTGGAAGAACCAGTCACACCATGTGTGCTATCTGCCGGGTTTTCATTCAAGAGTGTAGGCGATTCCTCTGGTTTGGAATTCTCTTCTCCTATTCCCTCGATGCTTAGCTTTTCATTCCTGAGTCCCTCTCCTGTCGTTGAACACAAGAGTTGTAAATTGGAGTGTTCAGCTAACATGTCAGATGTAGATGCAATTGCTGGAGAAGCCAGCTTGGGAAAGTTACTTTTATTACAAGATTCTCATCTTTGCATTGAACACGATGCTAAAGAAACGAATCGCAAGCCTGCTGAGGCTAAAAGGTCAATTGGAATGAATGGACACAAGGTACTGGGAATCCACAGCAAGAGAAACAGGACAATTGGACTTGGTGAGTGTGAGCAACTTGACTTTGTAGTGACTGAATCAGTCATCCGTTGGTCATCCTGCACTCAACTACCAACATCTTTGAGATCATCTCTCGTTTGCTAA 1557 0.4355 MAVAKSDSNSEPCTSYNCYKVAALTETILETSQVSNLKDRYVLGEQLGWGQFGVIRACSDKLTGEVLACKSIAKDRLVTSDDLRSVKLEIEIMARLSGHPNVVDLKAVYEEEGFVHLVMELCAGGELFHRLEKHGWFSESEARVIFRHLMQVVLYCHENGVVHRDLKPENILLATRSSSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGAYNQAADVWSAGVILYILLSGTPPFWGKTKSRIFEAVKAASLKFPLEPWDRISESAKDLIKGMLCTDPSRRLTAQEVLDHCWMESNQTNQEQLGQNQIQSCKQWDVGGSSFSASFMSRNQDISFGAGSPTCDAQSPTFTCRSSFSSFLEEPVTPCVLSAGFSFKSVGDSSGLEFSSPIPSMLSFSFLSPSPVVEHKSCKLECSANMSDVDAIAGEASLGKLLLLQDSHLCIEHDAKETNRKPAEAKRSIGMNGHKVLGIHSKRNRTIGLGECEQLDFVVTESVIRWSSCTQLPTSLRSSLVC 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01961 518 FunFam Calcium-dependent protein kinase 1 43 126 - -
Vimu8g01961 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Vimu8g01961 518 Gene3D Transferase(Phosphotransferase) domain 1 128 331 - -
Vimu8g01961 518 FunFam Phosphoenolpyruvate carboxylase kinase 128 315 - -
Vimu8g01961 518 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Vimu8g01961 518 CDD STKc_CAMK 40 298 - -
Vimu8g01961 518 SUPERFAMILY Protein kinase-like (PK-like) 38 364 IPR011009 -
Vimu8g01961 518 Pfam Protein kinase domain 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01961 518 SMART serkin_6 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01961 518 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Vimu8g01961 518 PANTHER SERINE/THREONINE-PROTEIN KINASE 27 333 - -
Vimu8g01961 518 ProSiteProfiles Protein kinase domain profile. 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01961 Vimu-Chr8 25403327 25405451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01961 28 322 EF-hand Containing Proteins AT3G57530 47.973 1.29e-98 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu8g01961 Pkinase 1.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01961 - - gmx:100776088 908.672