Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01958 ATGGACGTGGATGGGGGCAGCAAGCGTGTGTACAACCGTCTCGGCGGGGACGGGAAGCACCAGAAAGTGTGTTTCCACTGGCAAGCGGGCAAGTGCAATCGCTACCCGTGCCCCTTCCTGCACAGCGAATTGCCCGCATCTTCCCACGCCAACGGGGCCTCCTCGAAGCGTGCGTACGACAATTCGGGCTTATCGGGATTCTCGGGCCAGCGCGGACGCCCCAATTTCAACAACACGTGGGGCCGTGGCGGGGGTCGCGGCGGCGGCGGCGGTAGAGGGGTAGTGGTCAAGGCGGAAAAAGTTTGCAATTATTGGATTCAGGGGAATTGTAGTTATGGAGAGAGGTGTAAGTTCCTTCACTCTTGGAAAGTGGGAGACGGGTTTTCTTTGCTGACACAGCTCGAAGGGCATCAGAAGGCTGTGAGTGCAATCGCTTTTCCCTCTGGTTCAGATAAGCTGTATACTGGAAGCACTGACGAGACGGCAAGGATTTGGGACTGCCAGTCTGGAAAGGTGTGTGTAGGTGTGATCAATCTTGGTGGTGAAGTGGGTTGCATGATCAGTGAAGGCCCCTGGGTTTTTGTTGGGATACCCAATTCTGTCAAGGCCTGGAACACTCAAAATTTAATGGAGCTAAGTCTAAATGGCCCAGTCGGACAAGTTTATGCTCTTGTTGTAAACAATGATATGCTCTTTGCTGGTACACAGGATGGATCTATATTGGCATGGAAGTTTAATGTAGGTAACAACTGCTTCGAGCCAGCTGCATCACTTAAAGGTCATTCTCGTGGTGTTGTTTCATTAGTTGTTGGTGCTAATAGACTTTACTCTGGGTCAATGGACAATACAATAAGAGTATGGAACCTTGAAACCTTGCAATGTATACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGAACAATTCCTTTTATCTTGTTCCTTGGACAAAACTGTGAAGGTATGGTATGCTACAGAAAGCGGAAACTTGGAAGTGACATATACTCACAATGAGGAACATGGCATACTTACCCTATGTGGGATGCATGACTCACAAGGCAAGCCCATTTTGTTGTGTGCTTGCAATGATAACACTGTGCGCCTCTATGATCTGCCATCATTTGCAGAGAGAGGTAAGATATTAACTAAACAAGAGGTACGAGCAATGCAGATAGGGCCTAACGGCATATTCTTCACCGGAGACGGTACTGGTGAAGTAAGAGTGTGGAATTGCTGCAAGAAGGGAATTAAGGCTGAGGTTGGGAAGAGGCAGAAAAGGAGAGTGTTGAGTGGATATCCTTGGCGCAAAGCTGTGCTCAAAATCTTCAAGTTTCTTCACGTCTCTAATCTTGCTGATCACCCAATTATGAGAAATCCATCCATTGCTCGCGCATACGGAGAGGCTTTGTGGGGACGAATACGAAGGCGCGACGGAAGCACAACGGAGACGGGACAGAGGCGCGGCAAGAGTTTATGCGTTTTGGGAGAGGGCCTCTGCGTGTTGCGACGAGGCTGTCGTTCGGGGATTTCTTTTGGGTTCTTTGTTCTCGCTTCAGGCTAA 1575 0.4933 MDVDGGSKRVYNRLGGDGKHQKVCFHWQAGKCNRYPCPFLHSELPASSHANGASSKRAYDNSGLSGFSGQRGRPNFNNTWGRGGGRGGGGGRGVVVKAEKVCNYWIQGNCSYGERCKFLHSWKVGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETARIWDCQSGKVCVGVINLGGEVGCMISEGPWVFVGIPNSVKAWNTQNLMELSLNGPVGQVYALVVNNDMLFAGTQDGSILAWKFNVGNNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCIQTLTEHTSVVMSVLCWEQFLLSCSLDKTVKVWYATESGNLEVTYTHNEEHGILTLCGMHDSQGKPILLCACNDNTVRLYDLPSFAERGKILTKQEVRAMQIGPNGIFFTGDGTGEVRVWNCCKKGIKAEVGKRQKRRVLSGYPWRKAVLKIFKFLHVSNLADHPIMRNPSIARAYGEALWGRIRRRDGSTTETGQRRGKSLCVLGEGLCVLRRGCRSGISFGFFVLASG 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01958 524 SMART WD40_4 251 288 IPR001680 GO:0005515
Vimu8g01958 524 SMART WD40_4 207 244 IPR001680 GO:0005515
Vimu8g01958 524 SMART WD40_4 127 166 IPR001680 GO:0005515
Vimu8g01958 524 SMART WD40_4 291 328 IPR001680 GO:0005515
Vimu8g01958 524 SMART WD40_4 332 375 IPR001680 GO:0005515
Vimu8g01958 524 SMART WD40_4 378 415 IPR001680 GO:0005515
Vimu8g01958 524 ProSiteProfiles Zinc finger C3H1-type profile. 18 44 IPR000571 GO:0046872
Vimu8g01958 524 SUPERFAMILY WD40 repeat-like 128 420 IPR036322 GO:0005515
Vimu8g01958 524 ProSiteProfiles Zinc finger C3H1-type profile. 97 123 IPR000571 GO:0046872
Vimu8g01958 524 Pfam WD domain, G-beta repeat 130 166 IPR001680 GO:0005515
Vimu8g01958 524 Pfam WD domain, G-beta repeat 255 288 IPR001680 GO:0005515
Vimu8g01958 524 Pfam WD domain, G-beta repeat 293 327 IPR001680 GO:0005515
Vimu8g01958 524 Gene3D - 122 214 IPR015943 GO:0005515
Vimu8g01958 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 291 - -
Vimu8g01958 524 SUPERFAMILY CCCH zinc finger 98 121 IPR036855 GO:0046872
Vimu8g01958 524 SMART c3hfinal6 20 43 IPR000571 GO:0046872
Vimu8g01958 524 SMART c3hfinal6 98 122 IPR000571 GO:0046872
Vimu8g01958 524 ProSitePatterns Trp-Asp (WD) repeats signature. 275 289 IPR019775 -
Vimu8g01958 524 PANTHER - 98 418 IPR044715 -
Vimu8g01958 524 Gene3D - 215 441 IPR015943 GO:0005515
Vimu8g01958 524 PRINTS G protein beta WD-40 repeat signature 275 289 IPR020472 -
Vimu8g01958 524 PRINTS G protein beta WD-40 repeat signature 153 167 IPR020472 -
Vimu8g01958 524 PRINTS G protein beta WD-40 repeat signature 315 329 IPR020472 -
Vimu8g01958 524 MobiDBLite consensus disorder prediction 63 89 - -
Vimu8g01958 524 FunFam Zinc finger CCCH domain-containing protein 48 215 423 - -
Vimu8g01958 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 297 IPR001680 GO:0005515
Vimu8g01958 524 Pfam Zinc finger domain 102 120 - -
Vimu8g01958 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 134 166 - -
Vimu8g01958 524 MobiDBLite consensus disorder prediction 63 77 - -
Vimu8g01958 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 166 IPR001680 GO:0005515
Vimu8g01958 524 Gene3D - 16 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01958 Vimu-Chr8 25383072 25392215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01958 230 415 Miscellaneous Gene Families AT5G08390 26.020 1.20e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu8g01958 WD40 0.00011 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01958 - - gmx:100775542 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01958 8 25383072 25392215 Vimu8g01958 8 25383072 25392215 ECH