Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01956 ATGGGTAAGGGAGGAATGTCAATTGATGATAATGGAGAAGACAAAGAACAGAATATGGCTGCTTGGCTTCTGGGTATAAACAATCTCAAGATTCAACCTTTCAAGCTTCCTATTCTAGGACCCCATGATGTCAGAGTTAGAATGAAAGCTGTTGGGATCTGTGGGAGTGATGTTCACTACCTCAAGACACTGAGGTGTGCACACTTCATAGTTAAGGAACCAATGGTAATTGGTCATGAGTGTGCTGGGATCATAGAAGAAGTTGGTAGTGAGGTAAAAAATTTGGTGCCTGGTGACCGTGTGGCGCTTGAACCTGGGATCACTTGCTGGCGATGTGACCACTGCAAACAGGGTCGATATAATTTGTGTGATGAAATGAAGTTTTTTGCTACTCCACCAGTTCATGGTTCCCTGGCTAATCAGATAGTGCATCCTGCAGACCTATGTTTTAAGCTTCCAGACAACGTGAGCCTAGAGGAGGGGGCCATGTGTGAACCCTTAAGTGTTGGTATTCATGCTTGTAGGAGAGCTAATATTGGACCAGAAACAAATGTGTTGATCATGGGAGCTGGACCCATAGGACTTGTTACACTGCTTGCAGCTCGTGCTTTTGGAGCACCCAAGACTGTCATTGTTGATGTTGATGACTATCGTTTATCTGTTGCAAAATCTCTTGGTGCAGATGACATTGTTAAAGTCTCAACAAACATTCAGGATGTGGCTGAAGAAGTTGAGCTTATACAAAAGGTTATGGGAGCTGCTATAAATGTTACCTTTGATTGTGCTGGTTTTGACAAAACCATGTCTACAGCATTGGGTGCTACTCAGGCTGGTGGCAAAGTTTGCCTAGTGGGAATGGGACATTCTGAAATGACTGTCCCACTCAGCCCTGCAGCAGCAAGGGAAGTTGATGTGATTGGAGTTTTTCGCTATATGAACACATGGCCTCTTTGTCTTGAGTTTCTAAGGAGTGGGAAAATCGATGTAAAACCCCTTATAACTCACAGGTTTGGGTTCTCTCAAAAGGAAGTGGAAGAAGCCTTTGAAACAAGTGCTCGTGGTGGTACTGCCATCAAGGTCATGTTCAATCTTTAG 1095 0.4402 MGKGGMSIDDNGEDKEQNMAAWLLGINNLKIQPFKLPILGPHDVRVRMKAVGICGSDVHYLKTLRCAHFIVKEPMVIGHECAGIIEEVGSEVKNLVPGDRVALEPGITCWRCDHCKQGRYNLCDEMKFFATPPVHGSLANQIVHPADLCFKLPDNVSLEEGAMCEPLSVGIHACRRANIGPETNVLIMGAGPIGLVTLLAARAFGAPKTVIVDVDDYRLSVAKSLGADDIVKVSTNIQDVAEEVELIQKVMGAAINVTFDCAGFDKTMSTALGATQAGGKVCLVGMGHSEMTVPLSPAAAREVDVIGVFRYMNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFNL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01956 364 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 328 IPR036291 -
Vimu8g01956 364 CDD sorbitol_DH 20 363 IPR045306 GO:0016616
Vimu8g01956 364 SMART PKS_ER_names_mod 25 362 IPR020843 GO:0016491
Vimu8g01956 364 Pfam Alcohol dehydrogenase GroES-like domain 41 152 IPR013154 -
Vimu8g01956 364 Pfam Zinc-binding dehydrogenase 192 322 IPR013149 -
Vimu8g01956 364 Gene3D - 27 351 - -
Vimu8g01956 364 PANTHER SORBITOL DEHYDROGENASE 17 364 - -
Vimu8g01956 364 SUPERFAMILY GroES-like 18 190 IPR011032 -
Vimu8g01956 364 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 78 92 IPR002328 GO:0008270|GO:0016491
Vimu8g01956 364 FunFam Sorbitol dehydrogenase 169 309 - -
Vimu8g01956 364 Gene3D - 169 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01956 Vimu-Chr8 25355844 25359502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01956 31 297 Monolignol Biosynthesis Gene Families AT4G37980 26.619 2.72e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01956 K00008 - gmx:100791559 699.123