Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01948 ATGGGCAAGGAGGGGTATTTTGCTGGAAGATCATCAAAGAAAGGTGTAGTAGTTGGAGGAGGAGGTGATGCTGAAACACAAGCCCCTTCTGGTTGCATGTGTGCTGTTTTTCAGTTCTTTGATTTCCATCCCTTTCACTTTCCCAACATAACCCAACAACAACCATCTTTCAAACCACCCTCATGCACTTTACAAGACCATGCCACAGTCTCCAAAGGTGCTGAAGCACCTAGGAACAGCTTGGAATCAGAGGATGGTGATGCTCCTGTTTCATCTCTCTCTTCAAAAGAAGAGGATTTTAAAATTCCTAAGAATATTATGCAAATTAAGACAAGTGGAGGCACAAGAACAGGTGGTGGAAATTTGAATGACTTGTCTGCAGAAATCACCAGCTCACCAGGGACAAAGACACCAACTTTGGTGGCCAGGTTAATGGGTTTGGATCTTCTTCCAGGAACACACTCACCTTCTTTCTCTTCTTCTTCTTCCTGTCTTTCCGCTCCCAACACCCATGGCTATGCGCCACATCTGCACCACCACCTGAGGCACAAGCACCATGTCCAAACGAAGCATAGAAACAGCATAGACAGCAGTGACATTGCAGCCTCGAGATCTTTGCCTGAGACACCAAGAATCTCCTCAGCAAGAAGATCAGATGTTGATTATTACCACCACAGATTCTCACTTCAAATCAACAAGGAAAACATGAATCTTGTTGAGGATTTGGAGCTCCCTAGGCTCTCGTTTTCTAAAAGAAAGTGTGATGAGAACAATGGAAGGAGTCCAAGCCACTATGCTAGGCAAATAGTCAAACAGGTTAAGGATAGTGTGAGCAGAAAAGTTGGCCAAGACATCACAAACACTCTCAAAACAAGAGAGGAAATTGTAGGCCAACTCAAAAGCAAAAAATCTTCCAAAACATCACCACTGAAAGCAATTAATGAAACTGAAAATAGTCCACTGAAACCACACTCAAACACATCTTCCTATTCCCCAAGACTTAGATTCATTGACAAGAACAAACAAAACACCACAGCCACACCATCACAACTCACCCCAAAAGACCAAAACATGCTCAAACTACCATCACCTCCTCCTCCAGTTAACACTCAGCTTTCAAGAGTTTTAACAAAACCAAAGCCTCAAACGTTATCTTTGCCAGAGCACCAAGATTTTCATCAGAACACCAAATCTGTCCCAAAATGCAAAATGGCTACCAATGAAAAGTTCAACCCAAGGCTCAAAAGGCCTCCTCAGACATCGGACATAATCAGAAACAAACAAGAAGAATCGTTCGTCATTCGTCCCACATCGCCTACCAGAGCCAGTGACACCAAAACTTCTAAAAGCAAGAAAATTCATCCATTGTCAAGTAATCTTCTCAACAACATCAACACTGTACCAAATCTTCTTCCTGTCAAAACAGACCCTTCTCCTCCAGCAACCAAAATTCCTCCAAAACAGGTGGGTGATAGTCAAGAGTCCAAAAGCAGCTCACAGTTATCTAGTTGTTCGCGCCAGAGGTACAAACAAGAAGGAACAACCACACTCGCCACCCGAGAAACGTCACAGAACAAACATAACAGTGTCTCCGCCACCATTGGAGCACCGCAGCCTCACACCCCACAAGAGCTTCACTACATCACAGCAATCCTTGCTCATACAACTGCCCTAAACGTGGAGGACAACCTCACAAACCCACCATTAACGTCCCACCAACACCACCACTGGTTCTCCCCAACCCACTCACTTGACCCATCAATCTTCCTCCACCTGGAACACCTCGCCGCCAACAAAAATCTTAGCTTTTCCCCGAAAGAACAACTGGGTCACCATTGGAATCGGAAGTTACTGTTCGATCTGGTGGACGAGGTTCTGAAGGAGATTCTTCAAGAAAGAGGGAAGAATGGGCTTTGGTTTTCGAAGCGTGTTGGTGGTTGTTGGCACAGTGGGAGCGTTGTGGAGAGGGTGTGGAAGAGGGTGGGTGAGTTCCCACGTGCGAAATGTGAGGTGTTGGAGGACATTGATGGGTTGATTGAGGGAGAGGACATGCAGAGAGAGAAGAATGGTGAAGGGTTGGAGGAAGAAGGAGAAGGATTGGTGGCAGAGATTGAAGGGAACATATGGGACACTTTAGTGCATGAAACGGTTATGCTTATAAATTGCTTGGGAAATGTGAGAAAAGAGAAGTTATTAGATGATGTGAAAATATCACATCTTTGTACTATCTCTCAATTTTAA 2241 0.4467 MGKEGYFAGRSSKKGVVVGGGGDAETQAPSGCMCAVFQFFDFHPFHFPNITQQQPSFKPPSCTLQDHATVSKGAEAPRNSLESEDGDAPVSSLSSKEEDFKIPKNIMQIKTSGGTRTGGGNLNDLSAEITSSPGTKTPTLVARLMGLDLLPGTHSPSFSSSSSCLSAPNTHGYAPHLHHHLRHKHHVQTKHRNSIDSSDIAASRSLPETPRISSARRSDVDYYHHRFSLQINKENMNLVEDLELPRLSFSKRKCDENNGRSPSHYARQIVKQVKDSVSRKVGQDITNTLKTREEIVGQLKSKKSSKTSPLKAINETENSPLKPHSNTSSYSPRLRFIDKNKQNTTATPSQLTPKDQNMLKLPSPPPPVNTQLSRVLTKPKPQTLSLPEHQDFHQNTKSVPKCKMATNEKFNPRLKRPPQTSDIIRNKQEESFVIRPTSPTRASDTKTSKSKKIHPLSSNLLNNINTVPNLLPVKTDPSPPATKIPPKQVGDSQESKSSSQLSSCSRQRYKQEGTTTLATRETSQNKHNSVSATIGAPQPHTPQELHYITAILAHTTALNVEDNLTNPPLTSHQHHHWFSPTHSLDPSIFLHLEHLAANKNLSFSPKEQLGHHWNRKLLFDLVDEVLKEILQERGKNGLWFSKRVGGCWHSGSVVERVWKRVGEFPRAKCEVLEDIDGLIEGEDMQREKNGEGLEEEGEGLVAEIEGNIWDTLVHETVMLINCLGNVRKEKLLDDVKISHLCTISQF 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01948 746 Pfam DUF761-associated sequence motif 126 155 IPR032795 -
Vimu8g01948 746 MobiDBLite consensus disorder prediction 178 215 - -
Vimu8g01948 746 Pfam Domain of unknown function (DUF4378) 544 715 IPR025486 -
Vimu8g01948 746 MobiDBLite consensus disorder prediction 296 373 - -
Vimu8g01948 746 PANTHER LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN 1 721 - -
Vimu8g01948 746 MobiDBLite consensus disorder prediction 72 97 - -
Vimu8g01948 746 MobiDBLite consensus disorder prediction 488 538 - -
Vimu8g01948 746 MobiDBLite consensus disorder prediction 452 472 - -
Vimu8g01948 746 MobiDBLite consensus disorder prediction 194 212 - -
Vimu8g01948 746 MobiDBLite consensus disorder prediction 424 444 - -
Vimu8g01948 746 MobiDBLite consensus disorder prediction 408 540 - -
Vimu8g01948 746 MobiDBLite consensus disorder prediction 301 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01948 Vimu-Chr8 25231215 25234343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01948 107 716 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 33.651 5.57e-59 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01948 - - gmx:100795947 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01948 8 25231215 25234343 Vimu8g01948 8 25231215 25234343 ECH
Vimu8g01948 8 25231215 25234343 Vimu3g03120 3 44927336 44931010 PCT