Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01945 ATGGGAAGAGGAAGGGTTGTTTTGGAGAGAATAGAGAACAAGATCAACCGTCAAGTAACGTTCTCAAAGCGCAGAAGTGGGTTGCTGAAGAAGGCCTTTGAGCTTTCTGTGCTTTGTGATGCAGAAGTTGCCCTTATCGTCTTTTCTAGCCGTGGCAAGCTTTTTCAGTATAGCAGCACTGAGCATTTTCAAGGAGAAGAACTTGAGCCTCTTAGCTTTAAAGAATTGCAGAGTCTTGAGAAACAACTAGACATTACGCTTGCTCTAACTCGACAGCAGCAAACAAAGAAGCTCATGGCACGAGCTGATGAATTACGCGAAAAGAATTTCAATTTTAGAGAGCTCCAAGGGCATTGGCAGTCGACGTTGGCCTCTACTGCTAGGCGTTTGGCTTCTCTGCAACCTATTATTGTTAAGCAGGCTTGCTTGTGGAACGAACTCGTTAAGCGAGAATGGATGGGGTTAGGATCTGCACTATGCACCACCAATGCTAACCAATACCATACCAACAAAACACCACCGCACACTAACAGCGAGAACAAGAACACCGGAGAAGAAAACGGAGGTAGGAGAAGAGACGGATCTCAAAATGATGTTGGGGAAGGTAGGGCTTTGGACCGAGAGAAAACGGAGGTGGAAGGAGAGATGGATCTCAAAATGATGTTGGGGGAGGTTACTTTGGTGAAGAACCAAAATCGCGAATTGGGTGAAAGCTGCTGGTGCAAGGTTCGTAAATATTGGTTGTCATTGAAGGTGAAGAACCAAAATCGCGAAACAGAGTATGGGTTAAAGTGTTTTGTGGGAAAAGTTGTCGTTGATGGTTGA 825 0.4521 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSSRGKLFQYSSTEHFQGEELEPLSFKELQSLEKQLDITLALTRQQQTKKLMARADELREKNFNFRELQGHWQSTLASTARRLASLQPIIVKQACLWNELVKREWMGLGSALCTTNANQYHTNKTPPHTNSENKNTGEENGGRRRDGSQNDVGEGRALDREKTEVEGEMDLKMMLGEVTLVKNQNRELGESCWCKVRKYWLSLKVKNQNRETEYGLKCFVGKVVVDG 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01945 274 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Vimu8g01945 274 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
Vimu8g01945 274 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu8g01945 274 MobiDBLite consensus disorder prediction 166 183 - -
Vimu8g01945 274 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
Vimu8g01945 274 Gene3D - 13 72 IPR036879 GO:0003677|GO:0046983
Vimu8g01945 274 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu8g01945 274 Pfam K-box region 59 114 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu8g01945 274 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu8g01945 274 FunFam MADS-box transcription factor MADS-MC 13 82 - -
Vimu8g01945 274 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu8g01945 274 MobiDBLite consensus disorder prediction 184 211 - -
Vimu8g01945 274 MobiDBLite consensus disorder prediction 166 211 - -
Vimu8g01945 274 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu8g01945 274 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu8g01945 274 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01945 Vimu-Chr8 25191247 25203766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01945 1 127 MADS-box Gene Family AT2G45650 39.583 3.92e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu8g01945 K-box 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01945 K09264 - gmx:100793681 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01945 8 25191247 25203766 Vimu8g01945 8 25191247 25203766 ECH
Vimu3g03124 3 45008603 45014911 Vimu8g01945 8 25191247 25203766 PCT