Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01940 ATGAACTTGAAGCAATACTGTTGTTTCCTCTCAGACGAAGGGCAAAGCAAAATTCAAATTGCTAGGAAGAAGAACAATAGGGATTATCCATGGGAAATGTACACCTTGAAGGAGTTGCTTAGAGCCACAAACAACTTTCATCAGGATAATAAGATTGGAGAGGGTGGATTTGGCAGTATTGCAGTGAAACGATTGAAGACAATGACTGCCAAAGCAGAAATGGAGTTTGCAGTGGAAGTGGAAGTATTAGGAAGAGTGAGGCATAAGAATCTGTTGGGGTTGAGGGGATTCTATGCAGGAGGAGATGAAAGACTGATTGTGTATGATTACATGCCTAATCATAGCTTGCTCACACATTTGCATGGTCCACTTGCTAAGGAATGTCAGTTAGATTGGGCGAGAAGAATGAGCATAGCAATTGGAGCTGCTGAAGGCTTATTGTATTTGCACCATGAATCAACTCCTCACATCATACATAGAGATATAAAAGCGAGCAATGTTCTTCTGGATTCTGAATTCCAAGCTAAGGTTGCTGATTTTGGTTTTGCAAAGCTGGTACCAGATGGTGTGACCCATATGACCACAAAAGTTAAAGGCACCCTAGGATATCTGGCACCAGAATATGCTATGTGGGGAAAAGTTTCTGAGAGTTGTGATGTTTACAGCTTTGGAATTCTACTGCTGGAGATCATCAGTGCCAAGAAACCCATTGAGAAATTTCCTGGAGGAGTGAAAAGGGATATTGTTCAATGGGCCACACCATTTGTGAACAAAGGTCTCTTCGGCAATATCGCAGATCCAAAACTGAAGGGGAGATTTGATTTGCAGCAGTTGAAAAATGTGATCACAATAGCTCTTAGATGCACTGATACTAGCGCAGATAAGAGACCTAACATGAAAGAGGTCGTCAATTGGCTCAAGAATGGTGTAGGGAGCACTTAA 942 0.4183 MNLKQYCCFLSDEGQSKIQIARKKNNRDYPWEMYTLKELLRATNNFHQDNKIGEGGFGSIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGPLAKECQLDWARRMSIAIGAAEGLLYLHHESTPHIIHRDIKASNVLLDSEFQAKVADFGFAKLVPDGVTHMTTKVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKFPGGVKRDIVQWATPFVNKGLFGNIADPKLKGRFDLQQLKNVITIALRCTDTSADKRPNMKEVVNWLKNGVGST 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01940 313 Pfam Protein tyrosine and serine/threonine kinase 59 304 IPR001245 GO:0004672|GO:0006468
Vimu8g01940 313 Gene3D Phosphorylase Kinase; domain 1 10 110 - -
Vimu8g01940 313 Gene3D Transferase(Phosphotransferase) domain 1 111 310 - -
Vimu8g01940 313 CDD STKc_IRAK 52 303 - -
Vimu8g01940 313 ProSiteProfiles Protein kinase domain profile. 46 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01940 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Vimu8g01940 313 FunFam PTI1-like tyrosine-protein kinase At3g15890 18 110 - -
Vimu8g01940 313 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 308 - -
Vimu8g01940 313 PIRSF ILK 12 310 - -
Vimu8g01940 313 FunFam PTI1-like tyrosine-protein kinase At3g15890 111 313 - -
Vimu8g01940 313 SUPERFAMILY Protein kinase-like (PK-like) 27 308 IPR011009 -
Vimu8g01940 313 SMART serkin_6 46 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01940 Vimu-Chr8 25068002 25069441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01940 33 302 Trihelix Transcription Factor Family AT1G68690 44.211 3.06e-79 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vimu8g01940 PK_Tyr_Ser-Thr 2.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01940 - - vra:106757402 628.246