Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01939 ATGGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCAACAACCTCAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAGCGTTCAACCTCAGATCATGTGCATGAGGCTATGAATTACATCAACCACCTTCAAGATAAGGTAAAGCAATTGCAAGAAAAGAGGGATTCCTTGTTGAAGGTGTCTAATAATTTGAGTAGCATTGTTCCTGAGAATGAAAGCTCTTGTGTCACTCATCTTCCACCTTTGGTTTTTGTTCATCCTTTCCCTGGGGGCATTGAGATTATTTGCAGTCATAGCTTCAGGAAAAGTGTGTTTCCCATGTCAAGATTATTGAACATTCTGCATAAAGATGGACTTAACGTGGTCAACACTACTTCCATCAGAAGAGATGGTAGATTCATACATACCATACAATCAGAGGTTTGCAAGAGACTTTGCCTGAACCTGAAAATTGCTAATATCTTGGGAAAAATGAATATATTATTCATTCGGATGTTTCTTATTGCATATACCCTTAACTTCAGTGATTTGTACAGCAGTGAACTTGTTAAAAGATGTACTTTATCTGCCATAATTGTTGGTGCAGTACGAAGGGTAGCTAGTTGA 645 0.3814 MDENKKWMHKETERQRRQEMGKLCNNLRSLLPLEYIKGKRSTSDHVHEAMNYINHLQDKVKQLQEKRDSLLKVSNNLSSIVPENESSCVTHLPPLVFVHPFPGGIEIICSHSFRKSVFPMSRLLNILHKDGLNVVNTTSIRRDGRFIHTIQSEVCKRLCLNLKIANILGKMNILFIRMFLIAYTLNFSDLYSSELVKRCTLSAIIVGAVRRVAS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01939 214 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Vimu8g01939 214 Coils Coil 46 73 - -
Vimu8g01939 214 Gene3D - 1 89 IPR036638 GO:0046983
Vimu8g01939 214 SMART finulus 10 62 IPR011598 GO:0046983
Vimu8g01939 214 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Vimu8g01939 214 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 158 - -
Vimu8g01939 214 FunFam Transcription factor bHLH126 1 84 - -
Vimu8g01939 214 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 77 IPR036638 GO:0046983
Vimu8g01939 214 CDD bHLH_AtORG2_like 5 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01939 Vimu-Chr8 25049682 25050779 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01939 5 154 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 42.581 2.95e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu8g01939 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01939 - - pvu:PHAVU_004G124200g 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01939 8 25049682 25050779 Vimu8g01939 8 25049682 25050779 ECH
Vimu8g01939 8 25049682 25050779 Vimu3g03132 3 45082571 45086272 PCT