Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01938 ATGTTTCCTTTCCAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGTCCCCACCACCACCAGCAACACGAAATCTCCCAAGATCTGATTCTGGATGATTATGCTTCACTGGATGATAATCTTTCTGGGAAAAACTTCTCCAGAACCCAATCAGAGAATCTCTTCTATGAGCCAAATATAAAGAATCATGACTCTAACGAACATATGAAGAAGATGATTCACAAGGAGATCGAAAGGCAAAGGAGACAAGAAATGGCTACCAGCTATGCCTCTCTCAGATCCCTTCTCCCTCTTCAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAATTACATAAAGCACATGCAGAACAATATCAAAGAGCTTGTTGCCAAGAGAGATGAACTGAAGAAACTTTCCAGCCACAGCAATATGGAAAATAGCCATGAGGGTTTGCATACATCTTGCAACTTTACTGTCCATGAGAATAATGATATTATAGGAATCGAAATCACCAGTGGCTTCATTGAGGAAAGGCCTAAAGTTTCAAAGTTACTGCAGTTACTGATTCAAGAAGGTCTTGAAGTTGTTAGTTGCCTTTCATCCGAAGTCAATGGTAGATTGCTCCACAGTCTGCAGTGTGAGGTAAACAGTTCCAACTGTGTAGATCTATCTGAACTGAGAAGGAAAATTTCCAAAGCATTTCCAGCATTTAGATGTTCTGACTAA 729 0.406 MFPFQRGNELVIQFSNSPHHHQQHEISQDLILDDYASLDDNLSGKNFSRTQSENLFYEPNIKNHDSNEHMKKMIHKEIERQRRQEMATSYASLRSLLPLQFIKGKRSISDHMNEAVNYIKHMQNNIKELVAKRDELKKLSSHSNMENSHEGLHTSCNFTVHENNDIIGIEITSGFIEERPKVSKLLQLLIQEGLEVVSCLSSEVNGRLLHSLQCEVNSSNCVDLSELRRKISKAFPAFRCSD 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01938 242 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 61 233 - -
Vimu8g01938 242 FunFam Transcription factor bHLH126 62 150 - -
Vimu8g01938 242 Pfam Helix-loop-helix DNA-binding domain 71 123 IPR011598 GO:0046983
Vimu8g01938 242 SMART finulus 76 128 IPR011598 GO:0046983
Vimu8g01938 242 CDD bHLH_AtORG2_like 71 147 - -
Vimu8g01938 242 Gene3D - 61 156 IPR036638 GO:0046983
Vimu8g01938 242 Coils Coil 112 139 - -
Vimu8g01938 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 122 IPR011598 GO:0046983
Vimu8g01938 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 142 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01938 Vimu-Chr8 25030089 25031517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01938 67 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 45.665 5.94e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu8g01938 HLH 9.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01938 - - gmx:100780888 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01938 8 25030089 25031517 Vimu8g01938 8 25030089 25031517 ECH
Vimu8g01938 8 25030089 25031517 Vimu3g03133 3 45104861 45105831 PCT