Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01937 ATGCCATCCCGACAACTCTCCACCTCATCAGACACACCGCCACATCATCATCACCACCACTTTTTCATACCTCTCCTCGCCGTCACTCTCTCAGCCTTCCTCCTCCTCCTTCTCTTCCTCTTCCTCTGCCTCCACCGTACCCTCACCCGCAAACGCGCCGCCCACCATCCTCCTCCTCCTTCTTCCTCTTCCCCCCCGCACCGCCTCTCCTTCTCCGTCCTCCGCCGCGCCACCAATTCCTTCTCCTCCCGCCTCGGCCACGGCGGCTTTGGTCCCGTATTCGCCGGCACCCTCGCCGGTGTCCCAGTCGCCGTCAAGCTCATGGACTCTGCTTCTTCCCACCAGGGCGAGCGGGAGTTCCACAACGAGCTTTTTTTCGCATCCAAGCTCCTCTCTCCCCACGTCATCACCGCCACGCACTTCTCCTCTGACCCCAAACGACGCCGCTTTCTCTTGGTCTACGAGCTCATGCAAAACGGTAACCTCCAAGACGCGCTTTTGCACCGCAAGTGCCCCGAACTCTCGAACTGGAACACCCGCTTCTCAATCATTCTCAATATAGCCAAAGGAATTCACTTTCTCCACTCCTGTGACCCCCCTGTTATCCACGGCGACATAAAGCCGAGTAACGTTTTGCTTGATAGGGATTTCTCTCCCAGAATTGGCGACTTCGGGTTAGCGAGGTTGAGCTCGGAGCCTCCGAGGTTTGAAATTGAGGTCCTGGAGTGTGGTAGTGTTAATAATGATGAAGAGAAGCGGAAGGTGAAGGAGGAGGAGGTTGAGGATTTTGGATCGGTGGCGAGTACTCACAGTGTTTTTATGGAAGAAGGTAGCTTGGGGGTGGAGCAATCTCCTTCGCCAGAGACTGCGGCGATGATGGCGATGACTTCGCCAGAGACGGGTTTGGCGGTGGCAGGGGCGTCGCCGGGGTTTGAGAAGGAGGATGCGAAGAAGATGAACGGGAAAGGGTTGAAGAGTAATTCGGTGAGGGATTGGTGGTGGAAGCATGAGAATGACGTTGGGAGTGGGGAGAGTAAGAAGGTTAAGGATTATGTGATGGAGTGGATTGGAAGGGATGTGAATAAGGAGAGGGTGAAGGGTGGAATTGAGTGTGGGGATGTTGAGATGGGAAAGGAAGAGACCAAGAAGAAAAAGAAGAAGAGAAGGGTGAAGGAAATGGAATGGTGGGAGTCAATGGAAGAGGAGAAGTTTGACGGGGTTGTGAAGGGGAAGAGAAAGACCGTGAGGGATTGGTGGAAAGATGAGTGTTTTGAGGAGAACGAAAAGAAGGATAAGAAGAAGAAGAAGAAGAAGAGGAAGGGTGGGGATGTAAAGAATGATAATATTGAGAATGGTGATGATTGGTGGGTGAGTGATGATGCATTGGATAAGAGGAAGGGAAAGAGTAGGAGCAGAAACAACCGTGGGAACATGGATTGGTGGATGGATGGATTGAGTGGTGAGTTATGGAGAGGAAGGAGGAATAATAGCTTTGATTCTGCAAGTGGGGAGATTCCAAAGAGTGGTGGTGTTAGCAGTACTCCTAGTATGAGGGGAACTGTGTGTTATGTGGCTCCTGAGTGTGGCTATGGTGGGGATGTGACTGAGAAGTCTGATGTGTATAGTTTTGGGGTATTGTTGCTTGTCATAATTTCTGGGCGGCGACCACTTCAAGTGAGTGGTTCACCTTTGTCTGAGTTTCAGAGAGCGAATCTACTTTCCTGGGCACGCCATTGTGCACGAAATGGGAAGCTTTTAGAGTTGGTTGATGAGTCTCTGCAGTTGTTGGATAAAGAGCAGGCTCTTCTCTGCATCAAGGTGGCTTTGCTTTGTCTGCAGAAGTCACCTATTCGTCGTCCTTCAATGAAGGAGGTTGTGGGAATGCTCAGTGGGGTGTTGGAAACACCCCAATTGCCTGTTGAGTACTCTCCTTCAACCCCTTCTCGTTACCCTTTCAAGTCTAGGAGAAAAGGAAGGTAA 1980 0.5152 MPSRQLSTSSDTPPHHHHHHFFIPLLAVTLSAFLLLLLFLFLCLHRTLTRKRAAHHPPPPSSSSPPHRLSFSVLRRATNSFSSRLGHGGFGPVFAGTLAGVPVAVKLMDSASSHQGEREFHNELFFASKLLSPHVITATHFSSDPKRRRFLLVYELMQNGNLQDALLHRKCPELSNWNTRFSIILNIAKGIHFLHSCDPPVIHGDIKPSNVLLDRDFSPRIGDFGLARLSSEPPRFEIEVLECGSVNNDEEKRKVKEEEVEDFGSVASTHSVFMEEGSLGVEQSPSPETAAMMAMTSPETGLAVAGASPGFEKEDAKKMNGKGLKSNSVRDWWWKHENDVGSGESKKVKDYVMEWIGRDVNKERVKGGIECGDVEMGKEETKKKKKKRRVKEMEWWESMEEEKFDGVVKGKRKTVRDWWKDECFEENEKKDKKKKKKKRKGGDVKNDNIENGDDWWVSDDALDKRKGKSRSRNNRGNMDWWMDGLSGELWRGRRNNSFDSASGEIPKSGGVSSTPSMRGTVCYVAPECGYGGDVTEKSDVYSFGVLLLVIISGRRPLQVSGSPLSEFQRANLLSWARHCARNGKLLELVDESLQLLDKEQALLCIKVALLCLQKSPIRRPSMKEVVGMLSGVLETPQLPVEYSPSTPSRYPFKSRRKGR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01937 659 PANTHER OS07G0586332 PROTEIN 1 658 IPR044576 -
Vimu8g01937 659 Pfam Protein tyrosine and serine/threonine kinase 515 628 IPR001245 GO:0004672|GO:0006468
Vimu8g01937 659 MobiDBLite consensus disorder prediction 430 450 - -
Vimu8g01937 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vimu8g01937 659 Gene3D Transferase(Phosphotransferase) domain 1 496 640 - -
Vimu8g01937 659 MobiDBLite consensus disorder prediction 640 659 - -
Vimu8g01937 659 ProSiteProfiles Protein kinase domain profile. 79 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01937 659 SUPERFAMILY Protein kinase-like (PK-like) 57 648 IPR011009 -
Vimu8g01937 659 Pfam Protein kinase domain 83 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01937 659 Gene3D Transferase(Phosphotransferase) domain 1 64 246 - -
Vimu8g01937 659 SMART serkin_6 79 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01937 Vimu-Chr8 25015622 25017601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01937 507 629 Receptor kinase-like Gene Family AT3G58690 35.659 6.81e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vimu8g01937 Pkinase 4.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01937 - - gsj:114390604 1010.75