Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01921 ATGAAAGGTGTCTTGTCTTTTCTTCCCGAGCTCAGAAACCACTTTCTGTTGCTTCTCCTCGCAATGGAGCTCCTGCTGCTTCTTCTCTCTCCCTTTGCTTCTCCTCTCAGTGGTGAAGGACAAGCATTGATGAAGATTAAGGCTTCATTCAGCAATATAGCAGATCTTCTGCATGATTGGGATGATTTGCATAGTGACGACTTCTGTTCCTGGAGCGGAGTCTTGTGTGACAATGTCAGCCTTACTGTTCTCTCTCTAAACTTGTCAAGCTTGAACCTTGGTGGGGAGATATCACCGGCCATTGGTGACTTAGGAAACTTGCAATCCATAGACCTGCAGGGGAATAAACTTACTGGTCAAATTCCGGATGAAATTGGGAACTGTGCTGCACTTATTTATCTGGATTTGTCTGATAATCTGCTATATGGTGATATACCTTTCTCCATATCAAAACTGAAGCAGCTTGTGTTTCTGAATTTAAAGAGTAATCAGTTGACTGGTCCTATCCCTTCAACTTTAACCCAAATTCCTAACTTAAAGACTCTTGATCTTGCACGAAATAGACTCACTGGTGAGATTCCAAGGCTACTCTACTGGAATGAAGTCCTGCAATACCTTGATGTGAGAGGCAATAATTTGACTGGCACCATACCAGACAGCATTGGAAACTGCACAAATTTTGAAATCCTGGATCTGTCATATAACCAGATTTCTGGGGAGATTCCCTATAATATCGGATTTCTTCAAGTTGCTACTTTGTCACTTCAAGGAAATAGACTAACTGGTAAGATTCCGGAAGTCATTGGTTTAATGCAAGCCCTTGCCATTTTGGATTTGAGTGAGAATGAGCTCATAGGACCCATTCCTCCCATACTAGGCAATCTGTCTTTTACTGGCAAGTTGTACCTTCATGGAAACATGATCACTGGACCAATACCTCCAGAACTTGGCAATATGTCAAGACTAAGCTACCTGCAATTGAATGACAATAAACTAGTTGGCCAAATTCCGAATGAACTTGGGAAACTCGAACACTTGTTTGAATTGAATCTTGCCAATAATCATCTTGAAGGATCTATTCCACTTAACATTAGCTCCTGTACGGCCTTGAATAAGTTTAATGTGCATGGAAATCATTTAAGTGGTTCAATTCCTTTGAGCTTTAGCAGCCTCCAGAGCTTGACTTACTTAAACCTTTCTGCAAACAATTTCAAAGGGAGTATACCTGTTGAATTGGGCCACATAATAAATCTTGATACGTTAGATCTATCTAGCAATAATTTTTCAGGGCATGTTCCAGGGTCTGTTGGTTATCTTGAGCATCTTCTAACTTTGAACTTAAGCCATAATAGTCTTCAGGGTCCCTTGCCTGCTGAATTTGGGAATCTTAGAAGCATACAGATTATTGATATCTCATTCAACCATCTGTTGGGTAGTATGCCTCCAGAAATTGGTCAGCTGCAGAATCTTGTGTCTCTGAATGTCTCATATAATAACTTATCCGGGGTCATTCCTCTAATGAAGAACTTCTCCCGGTTTTCAGCTGACAGCTTCATTGGAAATCCATTGTTATGCGGAAATTGGTTAGGATCCATATGTGATCCTTACATGCCAAAATCCAGAGTGGTTTTCTCAAAGGCTGCAGTTGTTTGTCTCATAGTTGGTACCATCATATTATTGGCGATGGTAACTGTTGCTCTCTACAGATCAAGCCAATCCATGGAATTGATCAAAGGATCCAGGGGAACTGAACAAGGGCCACCCAAACTTGTAATTCTTCATATGGGCTTGGCCATCCACACCTTTGATGATATCATGAGAGTCACTGAGAATCTCAATGAAAAGTATATTGTAGGATATGGTGCCTCAGGTACCGTGTACAAATGTGTTTTGAAAAATTCCCGGCCAATTGCAATTAAACGACTATACAACCAGCATCAACACAACTCAAGGGCGTTTGAGGCAGAACTTGAAACTATTGGCAGCATCAGACACAGGAATCTTGTCACTTTGCATGGTTATGCTCTAACTCCTAATGGAAATCTTCTCTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTACATGGTCCCTTGAAAAAGGTAAAACTTGATTGGGAAGCACGCTTGAGGATTGCTGTGGGAGCTTCTGAAGGACTTGCTTATCTCCATCATGACTGCAATCCTAGAATTATTCACAGGGATATTAAGTCCTCAAATATCCTGATAGATGAGAACTTTGAAGCTCGTCTCTCTGATTTTGGCATTGCCAAATGTTTGTCAACTACAAGAACACATACATCAACATCTGTGGTTGGAACAATAGGCTATATTGACCCTGAGTATGCCAGGAGTTCTAGGTTGAATGAAAAATCTGACGTGTATAGCTTTGGTATCGTTCTACTTGAGCTACTCACAGGGAAGAAAGCAGTGGACAATGATTCCAACTTGCATCACTTGATATTATCTAAGGCAGATAACAACACTATAATGGAGACTGTGGATCCTGAGGTGTCTATTACCTGCATGGATCTGACCCATGTTAAGAAGACCTTTCAGCTTGCTCTTCTTTGCACAAAAGGAAACCCTTCTGAGAGGCCAACTATGCATGAGGTTGCCAGGGTTTTGGCATCACTACTCCCAGCACCTCCCAGCAACATCTTTGCCCCTCCTTCAAAGACCATTGATTATGCACAATTTGTGATTCAAAAGGGAAACAACATCCATCCCCCACAGATGGAAAGGTTACAATCTCAGAAGTGCTCTAATGATCAATGGTTTGTTCGCTTTGAGAATGTTGTATCAAATAACAGCCTATAG 2826 0.413 MKGVLSFLPELRNHFLLLLLAMELLLLLLSPFASPLSGEGQALMKIKASFSNIADLLHDWDDLHSDDFCSWSGVLCDNVSLTVLSLNLSSLNLGGEISPAIGDLGNLQSIDLQGNKLTGQIPDEIGNCAALIYLDLSDNLLYGDIPFSISKLKQLVFLNLKSNQLTGPIPSTLTQIPNLKTLDLARNRLTGEIPRLLYWNEVLQYLDVRGNNLTGTIPDSIGNCTNFEILDLSYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSENELIGPIPPILGNLSFTGKLYLHGNMITGPIPPELGNMSRLSYLQLNDNKLVGQIPNELGKLEHLFELNLANNHLEGSIPLNISSCTALNKFNVHGNHLSGSIPLSFSSLQSLTYLNLSANNFKGSIPVELGHIINLDTLDLSSNNFSGHVPGSVGYLEHLLTLNLSHNSLQGPLPAEFGNLRSIQIIDISFNHLLGSMPPEIGQLQNLVSLNVSYNNLSGVIPLMKNFSRFSADSFIGNPLLCGNWLGSICDPYMPKSRVVFSKAAVVCLIVGTIILLAMVTVALYRSSQSMELIKGSRGTEQGPPKLVILHMGLAIHTFDDIMRVTENLNEKYIVGYGASGTVYKCVLKNSRPIAIKRLYNQHQHNSRAFEAELETIGSIRHRNLVTLHGYALTPNGNLLFYDYMENGSLWDLLHGPLKKVKLDWEARLRIAVGASEGLAYLHHDCNPRIIHRDIKSSNILIDENFEARLSDFGIAKCLSTTRTHTSTSVVGTIGYIDPEYARSSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHHLILSKADNNTIMETVDPEVSITCMDLTHVKKTFQLALLCTKGNPSERPTMHEVARVLASLLPAPPSNIFAPPSKTIDYAQFVIQKGNNIHPPQMERLQSQKCSNDQWFVRFENVVSNNSL 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01921 941 Gene3D Ribonuclease Inhibitor 248 536 IPR032675 -
Vimu8g01921 941 SMART LRR_typ_2 176 200 IPR003591 -
Vimu8g01921 941 SMART LRR_typ_2 104 128 IPR003591 -
Vimu8g01921 941 SMART LRR_typ_2 439 462 IPR003591 -
Vimu8g01921 941 SMART LRR_typ_2 463 487 IPR003591 -
Vimu8g01921 941 SMART LRR_typ_2 343 367 IPR003591 -
Vimu8g01921 941 SMART LRR_typ_2 391 415 IPR003591 -
Vimu8g01921 941 SUPERFAMILY L domain-like 275 526 - -
Vimu8g01921 941 Pfam Leucine rich repeat 417 476 IPR001611 GO:0005515
Vimu8g01921 941 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515
Vimu8g01921 941 FunFam Leucine-rich repeat receptor-like protein kinase TDR 300 534 - -
Vimu8g01921 941 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 198 288 - -
Vimu8g01921 941 ProSitePatterns Protein kinases ATP-binding region signature. 618 640 IPR017441 GO:0005524
Vimu8g01921 941 SMART serkin_6 612 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01921 941 ProSitePatterns Serine/Threonine protein kinases active-site signature. 733 745 IPR008271 GO:0004672|GO:0006468
Vimu8g01921 941 ProSiteProfiles Leucine-rich repeat profile. 178 200 IPR001611 GO:0005515
Vimu8g01921 941 Pfam Protein kinase domain 615 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01921 941 Gene3D Ribonuclease Inhibitor 37 201 IPR032675 -
Vimu8g01921 941 Gene3D Ribonuclease Inhibitor 202 247 IPR032675 -
Vimu8g01921 941 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 36 197 - -
Vimu8g01921 941 Pfam Leucine Rich repeat 177 192 IPR001611 GO:0005515
Vimu8g01921 941 Pfam Leucine Rich repeat 223 240 IPR001611 GO:0005515
Vimu8g01921 941 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Vimu8g01921 941 Gene3D Phosphorylase Kinase; domain 1 580 687 - -
Vimu8g01921 941 Gene3D Transferase(Phosphotransferase) domain 1 688 886 - -
Vimu8g01921 941 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 282 878 - -
Vimu8g01921 941 ProSiteProfiles Protein kinase domain profile. 612 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01921 941 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 583 687 - -
Vimu8g01921 941 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 688 888 - -
Vimu8g01921 941 SUPERFAMILY Protein kinase-like (PK-like) 591 878 IPR011009 -
Vimu8g01921 941 SUPERFAMILY L domain-like 38 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01921 Vimu-Chr8 24852366 24859355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01921 106 941 Receptor kinase-like Gene Family AT5G07180 70.701 0.0 1241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vimu8g01921 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01921 K20718 - gmx:100305433 1617.05