Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01900 ATGGTTTGTTCAGTGCATCTGCTTCCACTTCTCTTCCTCCTCCTCCCGGCTTTGCTCTTGAATCCAACATGTGTCTGTGGCAATGACGAGCTTAGAGCTCTGATGGACCTGAAATCCAGTTTGGATCCAGAGGGGCGGTTTTTGTCCTCATGGACCATGGATGGCAGCCCCTGTGGTGGTTACTTTGAGGGAGTCGCTTGCAATGAGAAGGGTCAGGTGGCAAATGTTTCTCTGCAGGGGAAAGGCCTCTCTGGGAGGCTTTCACCGGCCATTGGTGGACTTAAGCACTTGACAGGACTCTACTTGCATTACAATTCTTTGTATGGGGAGATTCCAACGGAAGTTGCAAACTTGACTGAGCTCAGTGACTTGTACCTGAATGTGAATCATTTTTCTGGTGAAATCCCACCTGAGATTGGCAAGATGGAGAAGCTTCAAGTTTTGCAGCTCTGTTATAATCAGTTAACAGGAAGCATACCTACACAGCTTGGCGATTTGAAAAAGCTCAGTGTTCTTGCTCTTCAGTCAAACCAGTTGGCTGGAGCTATCCCTGCTACCCTAGGAGGTTTGGAAATGTTGACGAGGCTAGATTTGAGTTCTAATAATCTCTTTGGTTCCATTCCCACTAAACTAGCCAATCTTCCTTCACTGCAAGTTCTGGATGTTCACAACAATACTCTCTCTGGGAACGTACCTACTGCTTTGAAGAGACTAGAGAATGGATTTGTGTATGAAAACAATGTGGGGTTATGTGGAGTTGGGTTTTCATCCTTGAAAGCTTGCACTGCTTCAAATAATGTTAATCTCACACGACCTGAACCTTATGGAGCAGGAGTTGGAAGTATCTCTAGAGATATCCCAGAAACTGCTAATGTAAAGTTGCCTTGCAATACAACTCATTGCCAAAATCCATCCAAATCCAAACAAGCCACATCTATCACAGTTGGCATTGTTCTAGTAACAATTGCAGTATCAGCAATTGGTGTTTTGACCTTCACCGTATATAGGCGGCGGAAACAAAAGCTTGGAAGTGCCTTTGATACTTCTGAAGGCCGACTAAGTACAGATCAAGCCAAGAGTATATACAGGAAAAATGGATCTCCTTTGGTCAGCCTTGAGTATTCTAATGGGTGGGACCCTTTGGCTGATAGCAGGAATTTCAACGGGGATAAGCAAGATTTGTTCCAGAGTTTCAGGTTCAACTTGGAAGAAGTGGAGTCAGCTACTCAGTATTTCTCAGAGTTGAATCTGTTGGGGAAGAGCAACTTTAGTGCTACATATAAAGGGGTTTTGAGAGATGGATCTGCTGTTGCTATCAAGAGCATCAGTAAAACTAGTTGCAAATCAGATGAAGCTGAGTTTTTGAAGGGATTGAACATTTTGACCTCACTGAGAAATGAACATTTAGTGAGGTTGAGAGGATTTTGTTGTTCAAGGGGACGAGGGGAATGCTTTCTGGTCTATGATTTTGTTCCTAATGGAAATCTTACACGCTACCTTGATGTGAAGGAAGGTGATGGAGAAGTTCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGAATTGCTAAAGGTATAGCATATTTACATGCACACAAATCAAACAAACCATCCCTTGTTCACCAAAACATCTCAGCTGAGAAAGTGCTACTCGATCGGCGGTACAACCCGATGCTTTCAGATTCCGGCCTGTACAAGCTTCTCACCAATGACATTGTCTTCTCTGCACTAAAGGGTAGTGCAGCAAAGGGATACTTGGCTCCAGAATACACCACAACCGGCCGGTTCACGGAGAAAAGTGATGTTTATGCATTTGGAGTGCTTCTTTTCCAGATTATCACAGGGAAACAGAAGATCACAAGTGCAATGCGCCTTGCAGCAGAGTCCTTTACATTCCAAGAATTTATTGACCCGAACTTGCGTGGCAAGTTCTTTGAATATGAGGCAGCTAAACTAGCCAAGATGGCTTTACTTTGCTCCCATGAATCTCAGTTTGAGAGGCCAAGCATGGAAGCCATTGTTCAAGAACTGGGGAATTGTAGTAGCTGTCTTTGA 2055 0.4384 MVCSVHLLPLLFLLLPALLLNPTCVCGNDELRALMDLKSSLDPEGRFLSSWTMDGSPCGGYFEGVACNEKGQVANVSLQGKGLSGRLSPAIGGLKHLTGLYLHYNSLYGEIPTEVANLTELSDLYLNVNHFSGEIPPEIGKMEKLQVLQLCYNQLTGSIPTQLGDLKKLSVLALQSNQLAGAIPATLGGLEMLTRLDLSSNNLFGSIPTKLANLPSLQVLDVHNNTLSGNVPTALKRLENGFVYENNVGLCGVGFSSLKACTASNNVNLTRPEPYGAGVGSISRDIPETANVKLPCNTTHCQNPSKSKQATSITVGIVLVTIAVSAIGVLTFTVYRRRKQKLGSAFDTSEGRLSTDQAKSIYRKNGSPLVSLEYSNGWDPLADSRNFNGDKQDLFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSAVAIKSISKTSCKSDEAEFLKGLNILTSLRNEHLVRLRGFCCSRGRGECFLVYDFVPNGNLTRYLDVKEGDGEVLEWSTRVSIVKGIAKGIAYLHAHKSNKPSLVHQNISAEKVLLDRRYNPMLSDSGLYKLLTNDIVFSALKGSAAKGYLAPEYTTTGRFTEKSDVYAFGVLLFQIITGKQKITSAMRLAAESFTFQEFIDPNLRGKFFEYEAAKLAKMALLCSHESQFERPSMEAIVQELGNCSSCL 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01900 684 SUPERFAMILY Protein kinase-like (PK-like) 391 677 IPR011009 -
Vimu8g01900 684 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Vimu8g01900 684 Gene3D Ribonuclease Inhibitor 29 141 IPR032675 -
Vimu8g01900 684 FunFam Leucine-rich repeat receptor-like kinase 29 138 - -
Vimu8g01900 684 SMART LRR_typ_2 118 142 IPR003591 -
Vimu8g01900 684 SMART LRR_typ_2 190 213 IPR003591 -
Vimu8g01900 684 SMART LRR_typ_2 166 189 IPR003591 -
Vimu8g01900 684 SMART LRR_typ_2 94 117 IPR003591 -
Vimu8g01900 684 SMART LRR_typ_2 214 237 IPR003591 -
Vimu8g01900 684 Gene3D Phosphorylase Kinase; domain 1 383 490 - -
Vimu8g01900 684 Gene3D Transferase(Phosphotransferase) domain 1 491 683 - -
Vimu8g01900 684 FunFam Protein NSP-INTERACTING KINASE 2 491 681 - -
Vimu8g01900 684 FunFam Protein NSP-INTERACTING KINASE 2 140 262 - -
Vimu8g01900 684 FunFam Protein NSP-INTERACTING KINASE 2 383 490 - -
Vimu8g01900 684 Pfam Leucine rich repeat 168 227 IPR001611 GO:0005515
Vimu8g01900 684 SUPERFAMILY L domain-like 24 239 - -
Vimu8g01900 684 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 75 678 - -
Vimu8g01900 684 Gene3D Ribonuclease Inhibitor 143 254 IPR032675 -
Vimu8g01900 684 ProSiteProfiles Protein kinase domain profile. 412 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01900 684 CDD TM_EGFR-like 311 341 - -
Vimu8g01900 684 Pfam Protein tyrosine and serine/threonine kinase 416 677 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01900 Vimu-Chr8 24627287 24630536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01900 5 525 Miscellaneous Gene Families AT4G22730 56.660 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vimu8g01900 PK_Tyr_Ser-Thr 1.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01900 - - vum:124819657 1319.29