Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01899 ATGGCTTCCCTTGCAGCTTCCACTGCTGCTGCATCCCTTGGCATGTCAGAAATGCTTGGAAACCCCATCAACCTCAGTGGTGCCACAAGGCCTGCTCCATCTCCCTCTAGCCCTGCCTCCTTCAAAACTGTCGCTCTTTTCTCCAAAAAGAAGGCAGCACAACCTCCCCCCAAAAAAGCTGCTGCTGTTTCTCCTGCCAATGATGAGCTTGCCAAGTGGTATGGTCCTGACAGAAGGATCTTCTTGCCAGATGGTCTCTTGGACCGATCTGAGATCCCAGCGTACTTGACTGGAGAAGTCCCCGGAGATTATGGTTATGACCCTTTTGGTCTCAGCAAGAAGCCAGAGGACTTTGCCAAATATCAGGCATTTGAGTTGATTCATGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATATGGAGCAAACTGTGGTCCTGAGGCTGTTTGGTTCAAGACAGGAGCTCTGCTTCTTGATGGGGGTACGTTGAACTACTTTGGGAAGCCCATTCCCATCAATCTTATTGTGGCTGTCATTGCTGAGATAGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGACTGGCAAATGATCCAGATCAGGCAGCACTGCTAAAGGTGAAGGAAATCAAGAATGGTAGACTTGCTATGTTTGCCATGCTTGGTTTCTACTTCCAAGCCTATGTGACTGGAGAAGGCCCTGTTGAGAACCTCGCAAAGCATCTCAGCGACCCTTTTGGCAACAACTTGCTCACAGTCATTGCTGGAAATGCTGAAAGAGCTCCAACTCTTTAA 876 0.4852 MASLAASTAAASLGMSEMLGNPINLSGATRPAPSPSSPASFKTVALFSKKKAAQPPPKKAAAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGNAERAPTL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01899 291 Pfam Chlorophyll A-B binding protein 93 254 IPR022796 -
Vimu8g01899 291 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 35 280 IPR001344 GO:0009765|GO:0016020
Vimu8g01899 291 MobiDBLite consensus disorder prediction 27 41 - -
Vimu8g01899 291 SUPERFAMILY Chlorophyll a-b binding protein 73 281 - -
Vimu8g01899 291 Gene3D Chlorophyll a/b binding protein domain 80 291 - -
Vimu8g01899 291 MobiDBLite consensus disorder prediction 22 41 - -
Vimu8g01899 291 FunFam Chlorophyll a-b binding protein, chloroplastic 80 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01899 Vimu-Chr8 24610884 24613217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01899 11 291 Chloroplast and Mitochondria Gene Families AT4G10340 82.270 1.18e-153 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01899 K08916 - gmx:100806585 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01899 8 24610884 24613217 Vimu8g01899 8 24610884 24613217 ECH