Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01890 ATGGAGTGCAATAAGGATGAGGCTACCAGGGCTAAAGAAATTGCGGAGAGGAAGTTTGCTGCAAAGGATATATCAGGTGCAAAGAAATTTGCTTTGAAGGCCCTACATCTCTATCCTGAACTTGAGGGTATTTCTCAAATGGTAGCAACACTTGATGTATATATTTCTGCTGAGAATAAAGCAAACGGAGAAGCAGATTGGTACGGTGTACTCGGTGTGGATTCCCTTGCTGACGATGATACAGTAAGGAGACAATACAGGAAGTTAGCTCTCATGCTTCACCCTGATAAAAACAAGTCCATCGGTGCTGATGGGGCCTTTAAACTTGTGTCAGAGGCATGGAGTTTACTGTCAGATAGGGCTAAAAGAGCAGCATATGATAAGAAAAGTGGAAAAGAACGGAAAGTTTCTGCCAAGTTTGGAGGTTCATCAGCACAAAAAAGCACTAATGGTAGTTACAATTTTACTAAGACTACCCCTTCAAGTGCAACTGCTCCGAAGAAGAATACTGCTAAAGAACACACTTCATCTTCTCATCATAAGTCAAAATCAAATACATTTTGGACTGTTTGCAATAGGTGCAAAATGCAGTACGAGTATCTTAGAGTTTATCTTAACCTTAAGCTCTTATGTCCCTGCTGCCGTACAGCATTTGTTGCTGTAGAGACTGCTCCTCCACCTGCAAGTGGTATTAGGCCTGCAACTCAATGGGATTTTTCACAGAAGAAGCAAAATTCCAATCGCCAAGTACCTAGTAAAAGCAAATCAAATGCCGGAAAGCATGACATGGCTGCTCCAAATGTTGGAGTAGGGTCTTATAATAATACTGAAACAGCCAGTTTCCAATGGGCTCCATTCTCAAAATCATCTGGTGTTTCCAACGTTGCTCAAGCTGCAAGTGTGGTTCAGCAGGCATATGACAAAGTGAGGCGAGATCGTGAGGAGGCACAAGCGGCTAGCAAAAGGGAAGAAGCCTTAAAAAGGAAGCAGCATGCTTCTAAAAAGGGTTACTATAATCCTGCTAAGAAAAGAAGAGGGGGCACGGAGGATGCAAGTGCAAGTGGTGGTAAGGAAAACCGAATGGGTGGGGGAACAAACCCATCTAAACAGGCTAATTTTGAGTATACTAGGGTTAATGGAATCAATAAGACCGACAGTGTGGGGGATATCTCCCCAGTTGAACTTCGGAATCTTCTTATGGAGAAAGCTAGAAAAGAAATTAGCAATAAACTCAGGGAAAATCAGTCAAATGCTGTTGATAAAACAGTGATGAAAGACAGTGGAAATAACTTCTATAAAGTGAACGATAAAGGAGAAAATATCCTAAGAAATTCTGAAATGTGTGCTCAAGATAACATTGCCATCAAATCGTTTGCAGGCTCTAAAGGTAATAGAAAATTTCTAGAAACAACAGCTATAGATGTACCAGATCCTGATTTCCATGATTTTTACAAAGATCGAACTGAAGTATCTTTCAGTCAAAATCAAGTATGGGCTGTATATGATAATGATGATGGGATGCCTCGATATTATGCCATGATTTGTGGCATCATCTCCCTGAATCCATTCAAGATAAAGATCAGTTGGCTCAACCCAAACACCAACAGTAAACTGGACCCCATTAAATGGGTTGCTTCAGGATTTTCAAAAATTTGTGGGGATTTCAGATTGAGCAGACCTGAAATCTGTAGCTCGCCCAACTTTTTCTCCCACAAGGTTAGGTGGAGAACAGGTGCTGATGGGGCTATTTGTATATATCCCAGGAAAGGGGATGTTTGGGCCATATACAGGAATTGGTCTCCTGTCTGGGATGAGCTAACACCAGATGAGGTTATACACAAGTTTGATGTGGTTGAAGTACTTGAGGATTTTATTGAAGGGCATGGCATAGATGTTATCCCACTGGTCAAAGTGGCTGGATTCAGGACGGTATTTCACCACCACTTAGATCCAACAGAAATCAGGATCATTCCGATGGAAGAGATGTTTCGATTCTCTCATCAAATACCTTCATATGTACTCACAGGTCAAGAAGCTCCAGATGCTCCAAAGGGTTGCAGGGTGTTGGACCCAGCTGCTACTCCAATTGAGTTTCTTCAGCTAATAGAAGTTGTGAAGGAGGAAGACATGGCAGACAAAGATGATACTGATGTCAAAGAACTAAGTGATAACATAAAAAAAGATAGAATTGAGGAAATGATAAACTATATAGGAAAAATTGAGGAAGAAAAGGAGGGGAAGGATGAAGACATGCAGGAAGTAGATACAAGTGTAAACATGACAAAAACTAATAGTGAGGAAATGATCAATGATGTGGGGAAACATGGGGAAGGAAAGCAGGAAAAGAACAAAGATATGCAGTCAGTAGAAACTTTGGAGGACAGAGAGAAACAAAATATGCAGTAG 2406 0.4106 MECNKDEATRAKEIAERKFAAKDISGAKKFALKALHLYPELEGISQMVATLDVYISAENKANGEADWYGVLGVDSLADDDTVRRQYRKLALMLHPDKNKSIGADGAFKLVSEAWSLLSDRAKRAAYDKKSGKERKVSAKFGGSSAQKSTNGSYNFTKTTPSSATAPKKNTAKEHTSSSHHKSKSNTFWTVCNRCKMQYEYLRVYLNLKLLCPCCRTAFVAVETAPPPASGIRPATQWDFSQKKQNSNRQVPSKSKSNAGKHDMAAPNVGVGSYNNTETASFQWAPFSKSSGVSNVAQAASVVQQAYDKVRRDREEAQAASKREEALKRKQHASKKGYYNPAKKRRGGTEDASASGGKENRMGGGTNPSKQANFEYTRVNGINKTDSVGDISPVELRNLLMEKARKEISNKLRENQSNAVDKTVMKDSGNNFYKVNDKGENILRNSEMCAQDNIAIKSFAGSKGNRKFLETTAIDVPDPDFHDFYKDRTEVSFSQNQVWAVYDNDDGMPRYYAMICGIISLNPFKIKISWLNPNTNSKLDPIKWVASGFSKICGDFRLSRPEICSSPNFFSHKVRWRTGADGAICIYPRKGDVWAIYRNWSPVWDELTPDEVIHKFDVVEVLEDFIEGHGIDVIPLVKVAGFRTVFHHHLDPTEIRIIPMEEMFRFSHQIPSYVLTGQEAPDAPKGCRVLDPAATPIEFLQLIEVVKEEDMADKDDTDVKELSDNIKKDRIEEMINYIGKIEEEKEGKDEDMQEVDTSVNMTKTNSEEMINDVGKHGEGKQEKNKDMQSVETLEDREKQNMQ 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01890 801 MobiDBLite consensus disorder prediction 312 371 - -
Vimu8g01890 801 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vimu8g01890 801 PRINTS DnaJ domain signature 122 141 IPR001623 -
Vimu8g01890 801 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vimu8g01890 801 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vimu8g01890 801 MobiDBLite consensus disorder prediction 742 801 - -
Vimu8g01890 801 MobiDBLite consensus disorder prediction 768 801 - -
Vimu8g01890 801 MobiDBLite consensus disorder prediction 137 182 - -
Vimu8g01890 801 MobiDBLite consensus disorder prediction 312 331 - -
Vimu8g01890 801 MobiDBLite consensus disorder prediction 234 256 - -
Vimu8g01890 801 Pfam Domain of unknown function (DUF3444) 471 678 IPR024593 -
Vimu8g01890 801 MobiDBLite consensus disorder prediction 225 271 - -
Vimu8g01890 801 Gene3D DnaJ domain 63 185 IPR036869 -
Vimu8g01890 801 SMART dnaj_3 65 122 IPR001623 -
Vimu8g01890 801 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Vimu8g01890 801 PANTHER BNAC03G44070D PROTEIN 1 695 - -
Vimu8g01890 801 Pfam DnaJ domain 66 127 IPR001623 -
Vimu8g01890 801 MobiDBLite consensus disorder prediction 141 171 - -
Vimu8g01890 801 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Vimu8g01890 801 Coils Coil 306 329 - -
Vimu8g01890 801 CDD DnaJ 66 119 IPR001623 -
Vimu8g01890 801 SUPERFAMILY Chaperone J-domain 60 126 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01890 Vimu-Chr8 24544703 24549810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01890 4 230 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.599 4.47e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01890 - - gmx:100816712 1240.33