Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01864 ATGCCTTTGAAGGAATCAAAAACTGAGACACAGGTTGATCACATAGGAATATCAAGTACTCTATCAGATTTCATGCCTGCCATGAAAAAGAATTCTGAGCAGACTCATTTTGGATCTGTTTTCAACAAGTTGTTGAAGGAGCTTCGAGAACCTGTTGACTTTGAACTTCCTAACTGGTTTAATAAATCAAAGCCAATGCAGTACTCCTATATAAAACGCAGTATCCTTTGTACTTCTTCTGAAATGTTCGCAGTAGCTGTGTATTTTTCATGTAGAGCTGTATGGTTTATAAATATATATCTCACAAAGAAGGTCAAAAGATCCCGGTTTGACGATGATGGCATATTCTGTTCCTGTACTCCTTCCGCTGGATCTACTAGTGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCATCAGGCTGTAAATGTGGGAGCTCTTGTCTTAACAAACCATTCCAGAATCGCCCTGTGAAAAAGATGAAATTGGTTCAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAACATGGGGAGTTTGTTATAGAATATGTTGGAGAAGTCATTGATGACAGAACATGTGAGGAAAGACTTTGGAACATGAAACACCGTGGTGAAACGAATTTCTACTTATGTGAAATCAATCGGGATATGGTGATAGATGCAACATATAAGGGAAACAAATCAAGATACATCAACCATAGTTGCTGTCCAAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACTCGTGACATACAAAAGGGCGAGCATCTGACTTATGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCTGCATGTAGGCGTAAATTGGGTGTTCGACCTACCAAGCCTAAAATGTCTTCAGATGCTGCATTAAAATTAGTTGCATACCAGGTTTATCAGAATGGACGCTTGCAAATTGGTAGTTCCTCTTTTAATTTATCTTTGATATATAAAAGTACCCCTTTCCCTGTTGCATTTGGTTATTCAGGAGGTTCTCGTGTTAACCACCGAAAATGCTTACACAATTGCATTGGTGAAGTTATTAGAATAAAAAGCTTTGAAAATGAGAGGTTTGGAGTCATTAAACGGTTTGATGAACATTCTCGAAAACATTCAATCATGTTTGAGGATGGTCGTGTTGAAATTTATGACATGTCAAAAGAGGACTGGGAGCTTGTGAGATAG 1260 0.3865 MPLKESKTETQVDHIGISSTLSDFMPAMKKNSEQTHFGSVFNKLLKELREPVDFELPNWFNKSKPMQYSYIKRSILCTSSEMFAVAVYFSCRAVWFINIYLTKKVKRSRFDDDGIFCSCTPSAGSTSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQNRPVKKMKLVQTEKCGSGIVADEDIKHGEFVIEYVGEVIDDRTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAAACRRKLGVRPTKPKMSSDAALKLVAYQVYQNGRLQIGSSSFNLSLIYKSTPFPVAFGYSGGSRVNHRKCLHNCIGEVIRIKSFENERFGVIKRFDEHSRKHSIMFEDGRVEIYDMSKEDWELVR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01864 419 SUPERFAMILY SET domain 96 298 IPR046341 -
Vimu8g01864 419 Gene3D SET domain 90 318 IPR046341 -
Vimu8g01864 419 CDD SET_ASHR3-like 164 302 - -
Vimu8g01864 419 SMART shorttest3 112 162 IPR006560 GO:0005634|GO:0042054
Vimu8g01864 419 SMART PostSET_3 286 302 IPR003616 -
Vimu8g01864 419 ProSiteProfiles AWS domain profile. 112 161 IPR006560 GO:0005634|GO:0042054
Vimu8g01864 419 PANTHER SET DOMAIN PROTEINS 41 322 - -
Vimu8g01864 419 SMART set_7 163 286 IPR001214 GO:0005515
Vimu8g01864 419 Pfam SET domain 174 279 IPR001214 GO:0005515
Vimu8g01864 419 ProSiteProfiles SET domain profile. 163 280 IPR001214 GO:0005515
Vimu8g01864 419 FunFam Histone-lysine N-methyltransferase 92 318 - -
Vimu8g01864 419 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 127 345 IPR025787 -
Vimu8g01864 419 ProSiteProfiles Post-SET domain profile. 286 302 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01864 Vimu-Chr8 24374061 24380120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01864 136 301 C2H2 Transcription Factor Family AT2G23740 34.946 7.26e-23 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu8g01864 SET 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01864 - - gmx:100808183 641.343