Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01863 ATGGCAACTCAGATGAGTAAGAAGAGAAAGTTTGTTGCGGACGGAGTGTTCTTTGCCGAACTGAACGAGGTCCTAACACGTGAGTTGGCAGAGGATGGTTATTCCGGTGTTGAGGTTAGGGTTACGCCTATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGGTGAGAAGGGGAGGAGAATTAGGGAACTGACCTCAGTGGTGCAGAAGAGGTTCAAGTTTCCTGAGAACAGTGTTGAGCTTTATGCGGAAAAGGTGAACAACAGAGGTCTATGTGCCATTGCTCAGGCCGAGTCTCTTCGCTACAAGCTCCTCGGTGGTCTTGCTGTTCGCAGGTATGTATAA 360 0.5028 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYV 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01863 119 FunFam 40S ribosomal protein S3 1 92 - -
Vimu8g01863 119 Gene3D - 1 91 IPR015946 -
Vimu8g01863 119 CDD KH-II_40S_S3 5 95 - -
Vimu8g01863 119 Gene3D - 93 119 IPR036419 -
Vimu8g01863 119 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Vimu8g01863 119 Pfam KH domain 20 93 IPR004044 GO:0003723
Vimu8g01863 119 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 117 - -
Vimu8g01863 119 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01863 Vimu-Chr8 24370915 24371456 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01863 1 117 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 94.872 1.24e-76 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01863 K02985 - gmx:100800747 225.713