Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01862 ATGGAAAGCGGTGCCAAGGGATGCGAGGTCATTGTTAGTGGAAAATTGAGAGCTCAGAGAGCCAAATCCATGAAATTCAAGGATGGGTATATGATTTCTTCTGGACAACCAGTCAAGGATTACATCGACTCTGCTGTGAGACATGTGCTCCTTAGACAGGGTGTTCTTGGTATAAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTCCCAGATATTGTCACAATCCACACTCCCAAAGAGGAAGAATACAGTCAGCCTGCTACTGCTTCTGCTCCTGTTTTGGCCAATGATATTGAGGTTCCTGTTGCTTAA 339 0.4484 MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEYSQPATASAPVLANDIEVPVA 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01862 112 Gene3D - 1 94 IPR036419 -
Vimu8g01862 112 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 1 76 - -
Vimu8g01862 112 FunFam 40S ribosomal protein S3 1 94 - -
Vimu8g01862 112 Pfam Ribosomal protein S3, C-terminal domain 1 62 IPR001351 GO:0003735|GO:0006412
Vimu8g01862 112 ProSitePatterns Ribosomal protein S3 signature. 21 57 IPR018280 -
Vimu8g01862 112 SUPERFAMILY Ribosomal protein S3 C-terminal domain 1 65 IPR036419 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01862 Vimu-Chr8 24365753 24366276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01862 1 102 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 83.495 5.34e-59 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01862 K02985 - gmx:100795581 200.675