Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01841 ATGGCACACCTTCAGGTGGCGGAGTGCACTTCTTTGGAGGACATTCTTCACAACTGCAGTAGTTGCTGTTGTTTTAAGAGAAAATGTGGGCTATTTGGTGCAGGTGGTTTGATAATGTATGATGTTGGTTCAGCCAGTATAACATATAGTGCTAGTGATATACTTGCAGTACTACTTTTGGGAGCCGTTGGTGGAATTCTCGGAAGCATATATAATTACCTTGTGGATAAAGTTGTTCGAACATATAGCATCATCAATGAGTATGTCTCACATTCAAAGTTATCTACTTGCTGCATCATACCGATAAAAAAAGGTCCAGCTTTCAAAATCTCTCTTGTTGTGACAGTTGCTCTTTTGACATCATGTTGCTTTTATTTCTTGCCATGGGTTGCACACTGCATTCCCTGTCCTTCTAGTTCAACATTGGCCTGTCCCTCTGTTGATGAGTCTGGAGAATATCAAAACTTTCAATGCCCTCCAGGATACTACAATGATCTTGCTTCCCTCTTTCTGAACACCAATGATGATGCTATTCGCAATCTACTCAGCCCCAAGATAAGCAAAGAGTTTCATATTTCCAGTTTGTTTATCTACTTTGCTACTATTTACTGTCTTGGGATAATCACTTATGGCATTGCCATTCCATCCGGGCTCTTCATTCCTGTGATACTTGCCGGTGCTACCTACGGCCGTCTTGTTAGCCGGATCTTTGAACCGATCACAGGACTTGACAGAGGACTCTTTGCCCTACTTGGAGCTGCTTCCTTCCTTGGTGGCACAATGAGAATGACAGTTTCTATTTGTGTCATATTGCTTGAGCTCACCAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTGTTAGTCTCAAAAACTGTGGCTGACGGCTTCAACAAGGGTGTTTATGATCTAATACTTCAGATCAAAGGACTTCCATATTTGGAGGCTCATGCAGAACCTTACATGAAGAATTTAGTTGCACGTGATGTTGTTTCAGGTCCATTGATTACCTTTTCTGGCGTTGAAAAGGTTGGCATTATATGGCATGCTTTGAATGCTACAGGGCATAATGGATTTCCTGTCATTGATGAACCACCTTTCACAGATGCACCAGAATTATGTGGGGTTGTACTGAGGTCTCATTTACTAGTATTGCTGAAGGAGAAGATTTTCTCAAATGCTAAGGATTTCATAGATCAAAGTAGCTTCCAGAGAATTTCTACTTTAGATTTTGGAAAGGCAGGATCAGGAAAGGGTATCAAACTAGAGGATATTGATCTTGATGAGGAAGAAATGGATATGTATGTTGATCTCCATCCCATAACCAATGCATCTCCTTACACTGTGGTTGAGACAATGCCACTTGGCAAAGCTGCTATCATTTTCCGCCAACATGGACTCAGGCACATGTGTGTTGTTCCCAAGAGCCAAGGGAGACCTCCAGTTGTTGGGATTCTGACACGCCATGATTTTATGCCAGAGCATGTTTTGGGACTATACCCTCACATCAAGTCTCACAAACAGCATTTAGGGATATCAATGAAAAAGATTATTTCTTCAGTATTGGATTGCTGCGTTCATTAG 1587 0.4152 MAHLQVAECTSLEDILHNCSSCCCFKRKCGLFGAGGLIMYDVGSASITYSASDILAVLLLGAVGGILGSIYNYLVDKVVRTYSIINEYVSHSKLSTCCIIPIKKGPAFKISLVVTVALLTSCCFYFLPWVAHCIPCPSSSTLACPSVDESGEYQNFQCPPGYYNDLASLFLNTNDDAIRNLLSPKISKEFHISSLFIYFATIYCLGIITYGIAIPSGLFIPVILAGATYGRLVSRIFEPITGLDRGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLVSKTVADGFNKGVYDLILQIKGLPYLEAHAEPYMKNLVARDVVSGPLITFSGVEKVGIIWHALNATGHNGFPVIDEPPFTDAPELCGVVLRSHLLVLLKEKIFSNAKDFIDQSSFQRISTLDFGKAGSGKGIKLEDIDLDEEEMDMYVDLHPITNASPYTVVETMPLGKAAIIFRQHGLRHMCVVPKSQGRPPVVGILTRHDFMPEHVLGLYPHIKSHKQHLGISMKKIISSVLDCCVH 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01841 528 SUPERFAMILY Clc chloride channel 45 318 IPR014743 -
Vimu8g01841 528 SUPERFAMILY CBS-domain pair 319 493 IPR046342 -
Vimu8g01841 528 PRINTS Plant CLC chloride channel signature 166 182 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu8g01841 528 PRINTS Plant CLC chloride channel signature 26 33 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu8g01841 528 SMART cbs_1 335 388 IPR000644 -
Vimu8g01841 528 SMART cbs_1 446 497 IPR000644 -
Vimu8g01841 528 CDD CBS_pair_voltage-gated_CLC_euk_bac 328 495 - -
Vimu8g01841 528 Gene3D - 316 499 IPR046342 -
Vimu8g01841 528 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 19 499 - -
Vimu8g01841 528 Gene3D Clc chloride channel 18 315 - -
Vimu8g01841 528 Pfam Voltage gated chloride channel 43 296 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu8g01841 528 ProSiteProfiles CBS domain profile. 442 506 IPR000644 -
Vimu8g01841 528 Pfam CBS domain 446 492 IPR000644 -
Vimu8g01841 528 PRINTS Chloride channel signature 264 283 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu8g01841 528 PRINTS Chloride channel signature 52 71 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu8g01841 528 PRINTS Chloride channel signature 302 316 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu8g01841 528 PRINTS Chloride channel signature 246 262 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01841 Vimu-Chr8 24232436 24234701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01841 24 508 Ion Channels AT5G49890 67.490 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01841 K05016 - gmx:100809070 752.666