Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01840 ATGCTGATAATATTAATATTTGGTTCCATCCTTGGAGTTTCTGCTGGATTTGTGGTGGGAAAAGAGGGACCTATGGTACATACAGGTGCATGCATAGCTTCTTTATTGGGACAGGGTGGATCTCGCAAGTATCACTTGACTTGCAGTTGGCTTAGATTTTTCAAAAACGACCGAGACCGGCGAGACATGATTACTTGTGGTGCAGCTGCTGGTGTTGCTGCTGCCTTTCGTGCACCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTATATATTTCTGCTAAAAAATTTCTCTCTTCTAACATCGTGGTATCTTTAG 330 0.4424 MLIILIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTCSWLRFFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWYIFLLKNFSLLTSWYL 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01840 109 SUPERFAMILY Clc chloride channel 2 100 IPR014743 -
Vimu8g01840 109 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 2 94 - -
Vimu8g01840 109 Gene3D Clc chloride channel 1 108 - -
Vimu8g01840 109 PRINTS Chloride channel signature 5 24 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu8g01840 109 PRINTS Chloride channel signature 69 88 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu8g01840 109 Pfam Voltage gated chloride channel 2 93 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01840 Vimu-Chr8 24230301 24231203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01840 2 94 Ion Channels AT5G33280 74.194 1.14e-44 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01840 K05016 - gmx:100809070 171.785