Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01837 ATGGTATTTGATTTATTTGCCTCTGTTAATTTTGTAGAACTTCAGCAATTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAACGTATAGACGAAAGGCTATCTGCTCTGGGGAATTGTATTGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAGGGAGACTGAAGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACCATAGCAGGCAACATTCTTGTTGGTAGTTACTGTGCCTTCTCCAATAGGGGTGGTTTGGTTCACCCTCATACTTCCATAGAAGACTTGGATGAGCTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACCGTTAACCGGGGCAGTGAAGTAATAGCAGCTGGAATGACAGTTAATGATTGGACAGCATTTTGCGGTTCAGACACCACTGCAACAGAGCTATCTGTAATTGAGAGTGTTTTCAAGCTGAGAGAAGCTCAGCCTAGTGCCATTGTGGACGAGATGAGGAAATCCCTTGTTGATACCTATGTCTGA 537 0.4395 MVFDLFASVNFVELQQLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLVDTYV 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01837 178 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 13 177 IPR002769 GO:0042256|GO:0043022
Vimu8g01837 178 NCBIfam translation initiation factor IF-6 12 157 IPR002769 GO:0042256|GO:0043022
Vimu8g01837 178 SUPERFAMILY Pentein 10 157 - -
Vimu8g01837 178 Gene3D - 7 158 - -
Vimu8g01837 178 Pfam eIF-6 family 12 136 IPR002769 GO:0042256|GO:0043022
Vimu8g01837 178 SMART eIF6neu2 2 137 IPR002769 GO:0042256|GO:0043022
Vimu8g01837 178 Hamap Translation initiation factor 6 [eif6]. 1 178 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01837 Vimu-Chr8 24213100 24214419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01837 13 178 Eukaryotic Initiation Factors Gene Family AT3G55620 90.964 4.76e-113 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01837 K03264 - gmx:100813909 327.02