Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01812 ATGAAAAACTCTGAGGCAACGACACATGCTGGTATGGAGATAGAAGCAACAGCTAGGCCTTCTGGAAATGGTTCCACCCTACCAGGGTTGAGTCCTCTCAGTGAGACCCTTTGGAGAGAGAAGGCCAACACAGAGATCATTGGAGATGTTTCAGCAAGACTCACATGGAAGGATCTGACCGTGATGGTCACTCTTAGCAACGGCGAGACACAAAATGTTTTGGAGGGTCTAACTGGTTATGCTGAACCAGGAACCTTCACTGCTCTCATGGGGCCCTCAGGTTCTGGAAAATCTACACTTCTTGATGCACTTTCTAGTCGCCTAGCTGCAAATGCCTTTCTTTCAGGCACCATCCTTCTCAATGGACGCAAAGCCAAACTCTCTTTTGGCACTGCAGCTTATGTGACACAAGATGATAACTTGATCGGTACCCTAACAGTGAGGGAGACGATATCATATTCAGCTCGTTTGCGTTTGTCTGATAACATGCCATGGGCAGATAAGAGAGCATTGGTTGAGAGCACCATTGTGGCAATGGGACTGCAAGATTGTGCAGACACAGTGATTGGAAATTGGCACTTGCGTGGGATCAGTGGTGGGGAGAAGAGAAGGGTTAGCATTGCCTTGGAAATCTTGATGAGACCAAGGTTGCTTTTCCTTGATGAGCCAACCAGCGGACTTGACAGTGCTTCAGCTTTCTTTGTGACTCAGACACTACGTGCCTTGGCAAGGGATGGGAGAACCGTGATAGCCTCTATTCATCAACCTAGCAGTGAAGTGTTTGAGTTGTTTGACCAATTGTACTTGCTTTCTAGCGGCAAAACTGTTTATTTCGGACAGGCTTCAGAGGCATATGAGTTCTTTGCACAAGCTGGTTTCCCTTGTCCTGCTTTGAGGAACCCTTCTGATCATTTCCTCAGGTGCATCAATTCTGACTTTGACAAAGTCAAGGCCACTCTCAAAGGGTCCATGAAACTGAGGTTTGAGGGAAGTGATGATCCTTTGGACAAGATCACTACTGCTGAAGCAATCAGAACTCTTATTGACTTCTACCGCACTTCTCAGCACTCTTATGCTGCAACACAAAAAGTGGATGAGATATCCAAAGTTAAGGGAACAGTGCTTGAAGCTGGAGGAAGTGAGGCTAGTTTCTTGATGCAGTCTTACACTTTAACCAAACGTTCCTTCACTAACATGTCAAGGGACTTTGGCTACTATTGGCTTAGGCTTGTTATCTACATTGTTGTCACTATCTGTATTGGAACCATTTATTTGAATGTGGGGACAGGCTACAACTCTATTCTGCAATTTGAAGTGGTCGTTGTATCAAAGTTTTGCAAGAAATTTGGCCTTCTTGAAGTTCATGCCAGAGGTTCTTGTGCATCTTTTGTCTTTGGTTTTGTGACCTTCATGTCAATTGGTGGATTCCCTTCATTTGTTGAAGACATGAAGGTTTTCCAAAGGGAGAGGCTTAATGGTCACTATGGGGTCACTGCATTTGTCATCAGCAACACATTATCTGCAATGCCCTTCCTGATTTTGATCACTTTTCTCTCTGGAACCATCTGCTACTTCATGGTTCGCCTGCACCCTGGCTTTTGGCATTACCTCTTCTTTGTGCTGTGCCTTTATGCCAGTGTCACAGTGGTTGAAAGCTTAATGATGGCAATTGCCAGCATTGTCCCCAACTTCCTCATGGGCATCATTATTGGAGCAGGAATTCAGGGCATATTCATGCTGGTCTCAGGCTACTTTAGGCTTCCACATGATATCCCAAAGCCAGTCTGGCGTTACCCTATGTCATACATCAGTTTCCACTTCTGGGCACTGCAGGGTCAATACCAGAATGATTTGAGGGGCTTGATTTTTGACAACCAGTCACCAGACCTTCCAAAGATACCAGGAGAATACATCTTAGAAAAAGTGTTCCAAATTGATGTGAACAGATCAAAATGGATTAATCTGAGTGTGATCTTCAGCATGATTGTGATCTACCGCATTATATTCTTTATCATGATAAAAGTAAACGAAGATGTGACACCATGGGTGAGAGGGTACATGGCTAGAAGGAGAATGCAGCAGAAGAGTGGAGCACAGAACACAACTATTGCACCTGATGTTCTCACTCAGTCACCATCTCTCAGAACCTATGTTTCCCATCCAACAAAATGA 2172 0.4471 MKNSEATTHAGMEIEATARPSGNGSTLPGLSPLSETLWREKANTEIIGDVSARLTWKDLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLSDNMPWADKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSSGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDKITTAEAIRTLIDFYRTSQHSYAATQKVDEISKVKGTVLEAGGSEASFLMQSYTLTKRSFTNMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTGYNSILQFEVVVVSKFCKKFGLLEVHARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSAMPFLILITFLSGTICYFMVRLHPGFWHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLIFDNQSPDLPKIPGEYILEKVFQIDVNRSKWINLSVIFSMIVIYRIIFFIMIKVNEDVTPWVRGYMARRRMQQKSGAQNTTIAPDVLTQSPSLRTYVSHPTK 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01812 723 Gene3D - 48 292 IPR027417 -
Vimu8g01812 723 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 45 695 - -
Vimu8g01812 723 Pfam ABC-2 type transporter 254 313 IPR043926 GO:0140359
Vimu8g01812 723 Pfam ABC transporter 76 225 IPR003439 GO:0005524
Vimu8g01812 723 CDD ABCG_EPDR 51 279 - -
Vimu8g01812 723 FunFam ABC transporter G family member 11 48 291 - -
Vimu8g01812 723 SMART AAA_5 83 254 IPR003593 GO:0016887
Vimu8g01812 723 MobiDBLite consensus disorder prediction 1 32 - -
Vimu8g01812 723 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 54 297 IPR003439 GO:0005524
Vimu8g01812 723 Pfam ABC-2 type transporter 387 613 IPR013525 GO:0016020|GO:0140359
Vimu8g01812 723 ProSitePatterns ABC transporters family signature. 197 211 IPR017871 GO:0005524|GO:0016887
Vimu8g01812 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 291 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01812 Vimu-Chr8 23935444 23940403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01812 84 285 Calmodulin-binding Proteins AT2G36910 31.455 5.57e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01812 K05681 - gmx:100816389 1329.31