Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01804 ATGAGCTTGGCCTTTACCATAAGCTTTTTATATGTGGTCTTGTTTGTGTCATTCAAATCCAACATGGTGTTGTGCGTTGAAATTGAGGAATTCTTTCCAGAAGAAAGAGATGCTTTGATACTCATAAGGGATTCTTTGAATTCATCTGTGAATTTGCATGGGAATTGGACAGGCCCTCCTTGCATAGACAGTCTGAGTAGGTGGATTGGAATCACTTGCACAAATTGGCATGTTGTTCAAATTGTTCTTGAAGGAGTTAACCTTAGTGGTTATCTACCTCCCACATTTCTTCAAAACATAACTCTACTGAGCCAACTTGACTTCAGAAATAATGCACTTTTTGGACCATTGCCAAGCCTCAAGAATTTGGTGTTTTTGGAACAAGCCCTTTTATCATTCAATCTTTTCTCAGGGTCAATTCCTGTGGATTATGTTGAACTTACCAGTCTGAGAGTGTTGGAGCTGCAAGAGAATTACTTACATGGTCAAATTCCACCCTTTGATCAACCATCACTGACAAGTTTCAATGTGTCATATAATCATCTGTCAGGGCCTATTCCTGAAACTTCTGTGCTGATGAGGTTCCCAGAGAGTTCTTATGAAAATAATTCAGATCTTTGTGGAGTGCCATTGGATAAGTTATGTCCTATTCAACCTCCTGCCCCATCTCCAGCACCATTTTCTGCACCACCTCCTTTTGCTATGCCTCCAATTCCAGCAGTAAAGCCAAATAACAGGTTTCAAGCATGGACTGTTGCTGTGATTGGTGCTGCAGCTGCACTCATTCTTCTTTCTCTGATCATATTTATTGCTTTCTTGTTTCGTAAAAGACAAACAAGTGGAAAAGAAGTAAGAAGAGATGATTCAGCTGGGCATGCTTTTGGGGCATGGGCAAAGAAGATGGTGGCTTATGCTGGGGGCAGTGATGTTTCTGAGAGATTAGGCAGATTGGAATTTTCTAACAAGAAACTGCCAGTTTTTGACTTGGATGATTTATTAAGAGCATCAGCAGAAATTCTAGGAAGAGGGAACTTAGGTATTACGTACAAAGCAACACTTGAAACTGGAACTGTTGTTGCAGTGAAGAGACTTAACCACATGAATGAACTGAGCAAGAAGGAATTTCTCCAGCAGATCCAATTGCTAGGACAGATGAAGCATGAAAACATAGCAGAAATAATCTCCTTTTATTATTCAGAGGAGCAAAAGTTGGTCATATATGAATTTACCTCTGATGGCACTTTGTTTGAACTACTACATGAGGGTAGAGGAATTGGAAGAATGCCACTTGATTGGACCACAAGACTTTCTATCATCAAAGACATAGCAAAGGGTCTTCTTTTCCTTCATCATTCCTTGCCATCTCAAAAGGTTCCTCATGCCAACCTCAAGTCATCCAATGTTCTAATCCATCAAGATAGTAAAGGGTATCATTCCAAGCTCACAGACTATGGTTTCTTTCCTCTACTCCCAGCCAAACAGAATGCAGAAAAACTAGCCATAAGGAGGTCACCAGAATTTGTTCAAGGGAAGAAGCTAACACGCAATGCTGATGTTTATTGCTTTGGCATCATTGTGCTAGAGATTGTAACCGGCAAAATCCCTGGCCATATCATAGGTGAAATTGAAGAAACTACCAATGATCTTTCAGATTGGGTAAGAACTGTGGTGAACAATGATTGGTCCACAGACATATTGGATTTAGAAATACTTGCAGAAAAAGAAGGGCATGATGAAATGTTAAAGCTAACAGAGTTAGCTCTAGAGTGTACTGATATAACACCAGAGAAGAGGCCTAAAATGAGTGTAGTGTTGATGAGAATAGAAGAGATAGAGAAAATGAAAAAGGAGAATGACTAA 1860 0.3978 MSLAFTISFLYVVLFVSFKSNMVLCVEIEEFFPEERDALILIRDSLNSSVNLHGNWTGPPCIDSLSRWIGITCTNWHVVQIVLEGVNLSGYLPPTFLQNITLLSQLDFRNNALFGPLPSLKNLVFLEQALLSFNLFSGSIPVDYVELTSLRVLELQENYLHGQIPPFDQPSLTSFNVSYNHLSGPIPETSVLMRFPESSYENNSDLCGVPLDKLCPIQPPAPSPAPFSAPPPFAMPPIPAVKPNNRFQAWTVAVIGAAAALILLSLIIFIAFLFRKRQTSGKEVRRDDSAGHAFGAWAKKMVAYAGGSDVSERLGRLEFSNKKLPVFDLDDLLRASAEILGRGNLGITYKATLETGTVVAVKRLNHMNELSKKEFLQQIQLLGQMKHENIAEIISFYYSEEQKLVIYEFTSDGTLFELLHEGRGIGRMPLDWTTRLSIIKDIAKGLLFLHHSLPSQKVPHANLKSSNVLIHQDSKGYHSKLTDYGFFPLLPAKQNAEKLAIRRSPEFVQGKKLTRNADVYCFGIIVLEIVTGKIPGHIIGEIEETTNDLSDWVRTVVNNDWSTDILDLEILAEKEGHDEMLKLTELALECTDITPEKRPKMSVVLMRIEEIEKMKKEND 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01804 619 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Vimu8g01804 619 Gene3D Ribonuclease Inhibitor 32 217 IPR032675 -
Vimu8g01804 619 Gene3D Transferase(Phosphotransferase) domain 1 411 619 - -
Vimu8g01804 619 ProSiteProfiles Protein kinase domain profile. 334 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01804 619 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 616 IPR046959 -
Vimu8g01804 619 SUPERFAMILY L domain-like 34 201 - -
Vimu8g01804 619 Pfam Protein kinase domain 337 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01804 619 Gene3D Phosphorylase Kinase; domain 1 306 409 - -
Vimu8g01804 619 SUPERFAMILY Protein kinase-like (PK-like) 338 608 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01804 Vimu-Chr8 23831475 23833787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01804 55 617 Receptor kinase-like Gene Family AT1G68400 34.206 4.16e-105 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu8g01804 Pkinase 9.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01804 - - gmx:102668068 995.342