Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01753 ATGGTCGTTGCTGTAAAGAAGCTCAAGCCTGAAGGTTTTCAAGGTCATAAAGAATGGGAGAGAATCGGCTATTGGTCTGAGTTCATGCCGAAAGGGAGCTTAGAAAACCATATGTTTAGAAGAGGACCACAACCACTGTCTTGGTCAGTGAGGATGAAAGTGGCTATTGGTGCTGTTAGAGGACTCTGTTTTCTTCATAACGCCAAATCACAAGTCATATACCGTGATTTTAAAGCCTCTAACATCCTACTTGATGCGCTAAGATCAACTGCAAGTTCTTCGTTTTTCTTTGACTTCAATGCTAAACTCTCTGACTTTGGTTTAGCCAAGGCTGGTCCTACTGATAGAACTCACGTCTCTACTCAGGTCATGGGCACTCAAGGATATGCATCACTTGAATATGTTGCAACTAGCATGCTTTACCTGAATCCGGTGGACTGGGCAAAACCATATTTGAGCGACAAACAAATACTGTTCCGGATCATGGATACCAAGTTGGCAGGGCAATATTAG 513 0.4308 MVVAVKKLKPEGFQGHKEWERIGYWSEFMPKGSLENHMFRRGPQPLSWSVRMKVAIGAVRGLCFLHNAKSQVIYRDFKASNILLDALRSTASSSFFFDFNAKLSDFGLAKAGPTDRTHVSTQVMGTQGYASLEYVATSMLYLNPVDWAKPYLSDKQILFRIMDTKLAGQY 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01753 170 SMART serkin_6 1 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01753 170 PANTHER OS01G0588500 PROTEIN-RELATED 2 141 - -
Vimu8g01753 170 SUPERFAMILY Protein kinase-like (PK-like) 2 147 IPR011009 -
Vimu8g01753 170 ProSitePatterns Serine/Threonine protein kinases active-site signature. 72 84 IPR008271 GO:0004672|GO:0006468
Vimu8g01753 170 ProSiteProfiles Protein kinase domain profile. 1 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01753 170 Gene3D Transferase(Phosphotransferase) domain 1 2 147 - -
Vimu8g01753 170 Pfam Protein kinase domain 26 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01753 Vimu-Chr8 23392049 23393102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01753 1 140 Glycoside Hydrolase AT3G07070 43.787 5.43e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu8g01753 Pkinase 4e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01753 - - gmx:100809778 236.113