Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01748 ATGGGTAATGCGAGGTCAAATAAGCACTGGGAGGCAGAGTTACCACCAAATTTTGACAGAAATGGATATGGAATCGAGAGATTTATTCGTTCGAAGTATGTGGAGAAAAGATGGGCTTCAAAGGGTGAACTAAAACCAGCTTCAAAGTCAGCTGAAATAATCTTTAACCGGAATGAGTCACCAGCTGCTGGGGCCAAGAGTGCCATTCAGAAGAGTAGGAGATTATCTCTTGAGGAAAGCATTTTTGTGAAACATATGAACCATGTTCCACCTCCAACGACAAGATCTCCTACACCAAGATCTCAGGAGCTGTCCCCTGATTTGAAAAACAATCTTTCACCTCTACCATTAAGGAGGCCATCTGCATCATTTGATTTTGACAACTCCAGAATGAAGAACAATGGTACTGCTGACCATTTTGGCTTGTTTTCCGCCCCTAATGCCAAACAGGAATTCTCAACTACACCTCCTAGCTGGATAACAATTTCTCCCTCGACTATCAAACTCACCACCGCAATACGTAGCTTCAGACTCTACCGCATTCTCTCTCCTTCCATCTTCTTCTTCGATGCTTTCAGAAATTCACTTTCTAAATTTGCGGTAGCTTCGATTTCTTCTGTTCAGAGGCCATCTCCTCTTTGTGCGAAGCTCGTCTCGTTTTCTGAGCTAGACTTCCAATTCTCTACTGCGCAATTCTATTGTCAGCAATCATCGTCATCCTTTTCACTTCGATTCTTTTCCGATGCGTCTGCGGCGAGAATCATACCGTCGGCGGAGCCTCAGGCTGGGATCTCCGTTCCAACATCCAGGCCTGGTCGTCTACGACGACGTTTAATATCGGGGACGATCTCGGTACTATTCTCGTACACGCCAGTTCACGATGTGGTGGAGGTAAACCAACTAGGTTACGACACGTGTACGATAACTAACGCCCTTGCCACGTACGATAATGGAGAAACCGTGATTCACTTAGGCGGAGCGGGAACGCGCTACTTCGTGTGTGGCAGAATGGGCCACTGTCAACAGGGCCTTAAACTCCAGGTCCAAGTTCTAGCCCAGTCCAACAACGGAAGCAACGACGATCAAAACCAAGGCCCCGGCAACACCACCTCTTCTCCTCCGCCTCCTTCTCCTCCGCAGCCTCGTTCTCCTCCGCGGCCTCCTTCTCCCCCGCCTCACGGTGTCGAACACTCTCCCGCAGATGAGCCCTCACCCTGCGACTGTTCCGGTGCAGACGAGCGTTTTGGGGTGGTGCCGTTAATTACGCTCGTAATCGTGCTCGCTTTCGCCCGCGCTCCTTCTTCGCTTTTCCACGCCTCCGTTTTCATCTCATGCGTTTAA 1341 0.4929 MGNARSNKHWEAELPPNFDRNGYGIERFIRSKYVEKRWASKGELKPASKSAEIIFNRNESPAAGAKSAIQKSRRLSLEESIFVKHMNHVPPPTTRSPTPRSQELSPDLKNNLSPLPLRRPSASFDFDNSRMKNNGTADHFGLFSAPNAKQEFSTTPPSWITISPSTIKLTTAIRSFRLYRILSPSIFFFDAFRNSLSKFAVASISSVQRPSPLCAKLVSFSELDFQFSTAQFYCQQSSSSFSLRFFSDASAARIIPSAEPQAGISVPTSRPGRLRRRLISGTISVLFSYTPVHDVVEVNQLGYDTCTITNALATYDNGETVIHLGGAGTRYFVCGRMGHCQQGLKLQVQVLAQSNNGSNDDQNQGPGNTTSSPPPPSPPQPRSPPRPPSPPPHGVEHSPADEPSPCDCSGADERFGVVPLITLVIVLAFARAPSSLFHASVFISCV 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01748 446 MobiDBLite consensus disorder prediction 355 408 - -
Vimu8g01748 446 Pfam Plastocyanin-like domain 285 343 IPR003245 GO:0009055
Vimu8g01748 446 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 151 IPR044520 GO:0005096
Vimu8g01748 446 CDD Phytocyanin 284 350 - -
Vimu8g01748 446 MobiDBLite consensus disorder prediction 86 113 - -
Vimu8g01748 446 Gene3D - 277 351 IPR008972 -
Vimu8g01748 446 Gene3D Arf GTPase activating protein 1 45 IPR038508 -
Vimu8g01748 446 ProSiteProfiles Phytocyanin domain profile. 258 352 IPR003245 GO:0009055
Vimu8g01748 446 MobiDBLite consensus disorder prediction 369 398 - -
Vimu8g01748 446 SUPERFAMILY Cupredoxins 285 351 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01748 Vimu-Chr8 23359612 23364017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01748 285 387 Miscellaneous Gene Families AT2G32300 38.095 6.11e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01748 - K12486 gmx:100802691 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01748 8 23359612 23364017 Vimu8g01748 8 23359612 23364017 ECH
Vimu11g04976 11 69039889 69043398 Vimu8g01748 8 23359612 23364017 PCT